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de Oliveira AB, Cantarel AAM, Seiller M, Florio A, Bérard A, Hinsinger P, Le Cadre E. 2020. Short-term plant legacy alters the resistance and resilience of soil microbial communities exposed to heat disturbance in a Mediterranean calcareous soil. Ecological Indicators 108: 105740.
Vial L, Hommais F. 2019. Plasmid-chromosome crosstalks. Environmental Microbiology.
Durand T, Vautrin F, Bergeron E, Girard V, Polsinelli S, Monnin V, Durand G, Dauwalder O, Dumitrescu O, Laurent F, et al. 2019. Assessment of VITEK® MS IVD database V3.0 for identification of Nocardia spp. using two culture media and comparing direct smear and protein extraction procedures. European Journal of Clinical Microbiology & Infectious Diseases.
Aremu BR, Prigent-Combaret C, Babalola OO. 2019. Draft Genome Sequence of <i>Bacillus velezensis</i> Strain ZeaDK315Endo16 (ILG Newton, Éd.). Microbiology Resource Announcements 8: e00136-19, /mra/8/46/MRA.00136-19.atom.
Habbadi K, Duplay Q, Chapulliot D, Kerzaon I, Benkirane R, Benbouazza A, Wisniewski-Dyé F, Lavire C, Achbani EH, Vial L. 2019. Characterization and phylogenetic diversity of Allorhizobium vitis isolated from grapevine in Morocco. Journal of Applied Microbiology.
Miotto-Vilanova L, Courteaux B, Padilla R, Rabenoelina F, Jacquard C, Clément C, Comte G, Lavire C, Ait Barka E, Kerzaon I, et al. 2019. Impact of Paraburkholderia phytofirmans PsJN on Grapevine Phenolic Metabolism. International Journal of Molecular Sciences 20: 5775.
de Lajudie PM, Andrews M, Ardley J, Eardly B, Jumas-Bilak E, Kuzmanović N, Lassalle F, Lindström K, Mhamdi R, Martínez-Romero E, et al. 2019. Minimal standards for the description of new genera and species of rhizobia and agrobacteria. International Journal of Systematic and Evolutionary Microbiology, 69: 1852-1863.
Rondeau M, Esmaeel Q, Crouzet J, Blin P, Gosselin I, Sarazin C, Pernes M, Beaugrand J, Wisniewski-Dyé F, Vial L, et al. 2019. Biofilm-Constructing Variants of Paraburkholderia phytofirmans PsJN Outcompete the Wild-Type Form in Free-Living and Static Conditions but Not In Planta. Applied and Environmental Microbiology 85.
Marty L, Vigouroux A, Aumont-Nicaise M, Pelissier F, Meyer T, Lavire C, Dessaux Y, Moréra S. 2019. Structural basis for two efficient modes of agropinic acid opine import into the bacterial pathogen Agrobacterium tumefaciens. Biochemical Journal 476: 165-178.
Kopecky J, Samkova Z, Sarikhani E, Kyselková M, Omelka M, Kristufek V, Divis J, Grundmann G, Moënne-Loccoz Y, Sagova-Mareckova M. 2019. Bacterial, archaeal and micro-eukaryotic communities characterize a disease-suppressive or conducive soil and a cultivar resistant or susceptible to common scab. Scientific Reports 9: 14883.
Selak GV, Raboteg M, Dubost A, Abrouk D, Žanić K, Normand P, Pujić P. 2019. Whole-Genome Sequence of a Pantoea sp. Strain Isolated from an Olive (Olea europaea L.) Knot. Microbiology Resource Announcements 8.
Bethencourt L, Vautrin F, Taib N, Dubost A, Castro-Garcia L, Imbaud O, Abrouk D, Fournier P, Briolay J, Nguyen A, et al. 2019. Draft genome sequences for three unisolated <i>Alnus</i> -infective <i>Frankia</i> Sp+ strains, AgTrS, AiOr and AvVan, the first sequenced <i>Frankia</i> strains able to sporulate <i>in-planta</i>. Journal of Genomics 7: 50-55.
Eymery M, Morfin F, Doleans-Jordheim A, Perceval M, Ohlmann C, Mainguy C, Reix P. 2019. Viral respiratory tract infections in young children with cystic fibrosis: a prospective full-year seasonal study. Virology Journal 16: 111.
Minard G, Tikhonov G, Ovaskainen O, Saastamoinen M. 2019. The microbiome of the Melitaea cinxia butterfly shows marked variation but is only little explained by the traits of the butterfly or its host plant. Environmental Microbiology 21: 4253-4269.
Achouak W, Haichar FZ. 2019. Stable Isotope Probing of Microbiota Structure and Function in the Plant Rhizosphere.In: Dumont MG,, In: Hernández García M, éd. Methods in Molecular Biology. Stable Isotope Probing: Methods and Protocols. New York, NY: Springer, 233-243.



4th Thünen Symposium on Soil Metagenomics

Tremendous progress has been made since high-throughput DNA sequencing technologies entered the field of soil microbiology, and the scientific community involved in soil omics studies is continuously growing. With that development, there is also higher demand for guiding young scientists into this exciting field providing them with the best analytical tools available but also with a critical understanding of what can be achieved and which problems will require more research. Continuing the (...)

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Animation Scientifique

10/12 - 13:00
Beatriz Manriquez (eq3)

Etude de la dynamique évolutive des bactéries phytobénéfiques

12/12 - 13:30
Thèse de Florian Vautrin

Milieux urbains et exposition aux Actinobactéries pathogènes : cas particulier des bassins d’infiltration.

Salle des thèses, Rockefeller
17/12 - 13:00
Marine Durand (Eq 5)