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de Oliveira AB, Cantarel AAM, Seiller M, Florio A, Bérard A, Hinsinger P, Le Cadre E. 2020. Short-term plant legacy alters the resistance and resilience of soil microbial communities exposed to heat disturbance in a Mediterranean calcareous soil. Ecological Indicators 108: 105740.
Miotto-Vilanova L, Courteaux B, Padilla R, Rabenoelina F, Jacquard C, Clément C, Comte G, Lavire C, Ait Barka E, Kerzaon I, et al. 2019. Impact of Paraburkholderia phytofirmans PsJN on Grapevine Phenolic Metabolism. International Journal of Molecular Sciences 20: 5775.
de Lajudie PM, Andrews M, Ardley J, Eardly B, Jumas-Bilak E, Kuzmanović N, Lassalle F, Lindström K, Mhamdi R, Martínez-Romero E, et al. 2019. Minimal standards for the description of new genera and species of rhizobia and agrobacteria. International Journal of Systematic and Evolutionary Microbiology, 69: 1852-1863.
Rondeau M, Esmaeel Q, Crouzet J, Blin P, Gosselin I, Sarazin C, Pernes M, Beaugrand J, Wisniewski-Dyé F, Vial L, et al. 2019. Biofilm-Constructing Variants of Paraburkholderia phytofirmans PsJN Outcompete the Wild-Type Form in Free-Living and Static Conditions but Not In Planta. Applied and Environmental Microbiology 85.
Marty L, Vigouroux A, Aumont-Nicaise M, Pelissier F, Meyer T, Lavire C, Dessaux Y, Moréra S. 2019. Structural basis for two efficient modes of agropinic acid opine import into the bacterial pathogen Agrobacterium tumefaciens. Biochemical Journal 476: 165-178.
Kopecky J, Samkova Z, Sarikhani E, Kyselková M, Omelka M, Kristufek V, Divis J, Grundmann G, Moënne-Loccoz Y, Sagova-Mareckova M. 2019. Bacterial, archaeal and micro-eukaryotic communities characterize a disease-suppressive or conducive soil and a cultivar resistant or susceptible to common scab. Scientific Reports 9: 14883.
Selak GV, Raboteg M, Dubost A, Abrouk D, Žanić K, Normand P, Pujić P. 2019. Whole-Genome Sequence of a Pantoea sp. Strain Isolated from an Olive (Olea europaea L.) Knot. Microbiology Resource Announcements 8.
Bethencourt L, Vautrin F, Taib N, Dubost A, Castro-Garcia L, Imbaud O, Abrouk D, Fournier P, Briolay J, Nguyen A, et al. 2019. Draft genome sequences for three unisolated <i>Alnus</i> -infective <i>Frankia</i> Sp+ strains, AgTrS, AiOr and AvVan, the first sequenced <i>Frankia</i> strains able to sporulate <i>in-planta</i>. Journal of Genomics 7: 50-55.
Eymery M, Morfin F, Doleans-Jordheim A, Perceval M, Ohlmann C, Mainguy C, Reix P. 2019. Viral respiratory tract infections in young children with cystic fibrosis: a prospective full-year seasonal study. Virology Journal 16: 111.
Minard G, Tikhonov G, Ovaskainen O, Saastamoinen M. 2019. The microbiome of the Melitaea cinxia butterfly shows marked variation but is only little explained by the traits of the butterfly or its host plant. Environmental Microbiology 21: 4253-4269.
Achouak W, Haichar FZ. 2019. Stable Isotope Probing of Microbiota Structure and Function in the Plant Rhizosphere.In: Dumont MG,, In: Hernández García M, éd. Methods in Molecular Biology. Stable Isotope Probing: Methods and Protocols. New York, NY: Springer, 233-243.
Meyer T, Thiour-Mauprivez C, Wisniewski-Dyé F, Kerzaon I, Comte G, Vial L, Lavire C. 2019. Ecological Conditions and Molecular Determinants Involved in Agrobacterium Lifestyle in Tumors. Frontiers in Plant Science 10: 978.
Florio A, Bréfort C, Gervaix J, Bérard A, Le Roux X. 2019. The responses of NO2−- and N2O-reducing bacteria to maize inoculation by the PGPR Azospirillum lipoferum CRT1 depend on carbon availability and determine soil gross and net N2O production. Soil Biology and Biochemistry 136: 107524.
Galland W, Piola F, Burlet A, Mathieu C, Nardy M, Poussineau S, Blazère L, Gervaix J, Puijalon S, Simon L, et al. 2019. Biological denitrification inhibition (BDI) in the field: A strategy to improve plant nutrition and growth. Soil Biology and Biochemistry 136: 107513.
Akanny E, Bonhommé A, Commun C, Doleans-Jordheim A, Bessueille F, Bourgeois S, Bordes C. 2019. Development of uncoated near-spherical gold nanoparticles for the label-free quantification of Lactobacillus rhamnosus GG by surface-enhanced Raman spectroscopy. Analytical and Bioanalytical Chemistry 411: 5563-5576.



Auvergne-Rhône-Alpes Regional Workshop on Microbiome

Objectives : To gather regional actors working on the microbiology of interactions To review the advances of the field To define the strategic positionning of regional research To reinforce and nurture collaborations
Sessions :
Microbiota & Development
Invited speaker : Tobias Engl
Institute of Organismic and Molecular Evolution, Mainz, Germany
Pathobiome & Host Responses
Invited speaker : Estelle Grasset
Wallenberg Laboratory, Göteborg, Sweden
Microbiota, Ecology & (...)

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4th Thünen Symposium on Soil Metagenomics

Tremendous progress has been made since high-throughput DNA sequencing technologies entered the field of soil microbiology, and the scientific community involved in soil omics studies is continuously growing. With that development, there is also higher demand for guiding young scientists into this exciting field providing them with the best analytical tools available but also with a critical understanding of what can be achieved and which problems will require more research. Continuing the (...)

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Animation Scientifique

26/11 - 13:00
Arthur Escalas (UMR MARBEC, Montpellier)

Invasion of Mediterranean ecosystems by herbivorous lessepsian fish (Siganus rivulatus) is associated with a modification of its gut microbiome

28/11 - 09:30
workshop Microbiome

Délégation régionale du CNRS à Villeurbanne
10/12 - 13:00
Beatriz Manriquez (eq3)

Etude de la dynamique évolutive des bactéries phytobénéfiques

12/12 - 13:30
Thèse de Florian Vautrin

Milieux urbains et exposition aux Actinobactéries pathogènes : cas particulier des bassins d’infiltration.

Salle des thèses, Rockefeller
17/12 - 13:00
Marine Durand (Eq 5)