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Autres ...

2019

Article de revue


  • Sutherland, W.J., Broad, S., Butchart, S.H.M., Clarke, S.J., Collins, A.M., Dicks, L.V., Doran, H., Esmail, N., Fleishman, E., Frost, N., Gaston, K.J., Gibbons, D.W., Hughes, A.C., Jiang, Z., Kelman, R., LeAnstey, B., le Roux, X., Lickorish, F.A., Monk, K.A., Mortimer, D., Pearce-Higgins, J.W., Peck, L.S., Pettorelli, N., Pretty, J., Seymour, C.L., Spalding, M.D., Wentworth, J., Ockendon, N., 2019. A Horizon Scan of Emerging Issues for Global Conservation in 2019. Trends in Ecology & Evolution 34, 83-94. https://doi.org/10.1016/j.tree.2018.11.001


  • Thakur, B., Yadav, R., Vallon, L., Marmeisse, R., Fraissinet-Tachet, L., Sudhakara Reddy, M., 2019. Multi-metal tolerance of von Willebrand factor type D domain isolated from metal contaminated site by metatranscriptomics approach. Science of The Total Environment 661, 432-440. https://doi.org/10.1016/j.scitotenv.2019.01.201


  • Theillet, G., Grard, G., Galla, M., Maisse, C., Enguehard, M., Cresson, M., Dalbon, P., Leparc‐Goffart, I.L., Bedin, F., 2019. Detection of chikungunya virus-specific IgM on laser-cut paper-based device using pseudo-particles as capture antigen. Journal of Medical Virology 91, 899-910. https://doi.org/10.1002/jmv.25420


  • Valette, M., Rey, M., Gerin, F., Comte, G., Wisniewski-Dyé, F., 2019. A common metabolomic signature is observed upon inoculation of rice roots with various rhizobacteria. Journal of Integrative Plant Biology. https://doi.org/10.1111/jipb.12810

  • Vial, L., Hommais, F., 2019. Plasmid-chromosome crosstalks. Environmental Microbiology. https://doi.org/10.1111/1462-2920.14880


  • Xue, L., Almario, J., Fabiańska, I., Saridis, G., Bucher, M., 2019. Dysfunction in the arbuscular mycorrhizal symbiosis has consistent but small effects on the establishment of the fungal microbiota in <i>Lotus japonicus</i>. New Phytologist 224, 409-420. https://doi.org/10.1111/nph.15958


  • Yang, S., Zheng, Q., Yang, Y., Yuan, M., Ma, X., Chiariello, N.R., Docherty, K.M., Field, C.B., Gutknecht, J.L.M., Hungate, B.A., Niboyet, A., Le Roux, X., Zhou, J., 2019. Fire affects the taxonomic and functional composition of soil microbial communities, with cascading effects on grassland ecosystem functioning. Global Change Biology gcb.14852. https://doi.org/10.1111/gcb.14852


  • Yang, S., Zheng, Q., Yuan, M., Shi, Z., Chiariello, N.R., Docherty, K.M., Dong, S., Field, C.B., Gu, Y., Gutknecht, J., Hungate, B.A., Le Roux, X., Ma, X., Niboyet, A., Yuan, T., Zhou, J., Yang, Y., 2019. Long-term elevated CO2 shifts composition of soil microbial communities in a Californian annual grassland, reducing growth and N utilization potentials. Science of The Total Environment 652, 1474-1481. https://doi.org/10.1016/j.scitotenv.2018.10.353
Chapitre de livre


  • Achouak, W., Haichar, F.Z., 2019. Stable Isotope Probing of Microbiota Structure and Function in the Plant Rhizosphere, dans: Dumont, M.G., Hernández García, M. (Éd.), Stable Isotope Probing: Methods And Protocols, Methods In Molecular Biology. Springer, New York, NY, p. 233-243.
Livre

  • Faure, D., Joly, D., Salamitou, S., 2019. 101 secrets de l'ADN.
Rapport

  • Gentzbittel, L., Sache, I., Tharreau, D., Le Bourgeois, T., Balesdent, M.-H., Binet, F., Biondi, A., Castagnone, P., Clement, C., Deberdt, P., Desneux, N., Desprez Loustau, M.L., Escobar Gutiérrez, A., Jactel, H., Makowski, D., Monty, A., Navajas Navarro, M., Nesme, X., Steyer, S., Verdin, E., Verheggen, F., Wetzel, T., 2019. Résistance de la variété Platanor contre Ceratocystis platani (Contract). Agence Nationale de Sécurité Sanitaire de l'Alimentation, de l'Environnement et du Travail.

  • Silvie, P., Cellier, G., Gentzbittel, L., Martin, P., Milagros - Lopez, M., Ryckewaert, P., Sauvion, N., Reignault, P., Balesdent, M.-H., Castagnone, P., Chauvel, B., Desneux, N., Desprez Loustau, M.L., Escobar Gutiérrez, A., Jactel, H., Le Bourgeois, T., Nesme, X., Steyer, S., Suffert, F., Verdier, V., Verdin, E., Verheggen, F., Wetzel, T., 2019. Maladie du huanglongbing (Contract). Agence Nationale de Sécurité Sanitaire de l'Alimentation, de l'Environnement et du Travail.

2018

Article de revue


  • Alonso, L., Creuzé-des-Châtelliers, C., Trabac, T., Dubost, A., Moënne-Loccoz, Y., Pommier, T., 2018. Rock substrate rather than black stain alterations drives microbial community structure in the passage of Lascaux Cave. Microbiome 6, 216. https://doi.org/10.1186/s40168-018-0599-9


  • Bardon, C., Misery, B., Piola, F., Poly, F., Le Roux, X., 2018. Control of soil N cycle processes by <i>Pteridium aquilinum</i> and <i>Erica cinerea</i> in heathlands along a pH gradient. Ecosphere 9, e02426. https://doi.org/10.1002/ecs2.2426


  • Bernardin-Souibgui, C., Barraud, S., Bourgeois, E., Aubin, J.-B., Becouze-Lareure, C., Wiest, L., Marjolet, L., Colinon, C., Kouyi, G.L., Cournoyer, B., Blaha, D., 2018. Incidence of hydrological, chemical, and physical constraints on bacterial pathogens, <Emphasis Type="Italic">Nocardia</Emphasis> cells, and fecal indicator bacteria trapped in an urban stormwater detention basin in Chassieu, France. Environmental Science and Pollution Research 1-22. https://doi.org/10.1007/s11356-018-1994-2


  • Bertrand, C., Prigent-Combaret, C., Gonzales-Coloma, A., 2018. Chemistry, activity, and impact of plant biocontrol products. Environmental Science and Pollution Research. https://doi.org/10.1007/s11356-018-3209-2


  • Besset-Manzoni, Y., Rieusset, L., Joly, P., Comte, G., Prigent-Combaret, C., 2018. Exploiting rhizosphere microbial cooperation for developing sustainable agriculture strategies. Environmental Science and Pollution Research 1-18. https://doi.org/10.1007/s11356-017-1152-2


  • Bodilis, J., Denet, E., Brothier, E., Graindorge, A., Favre-Bonté, S., Nazaret, S., 2018. Comparative Genomics of Environmental and Clinical Burkholderia cenocepacia Strains Closely Related to the Highly Transmissible Epidemic ET12 Lineage. Frontiers in Microbiology 9. https://doi.org/10.3389/fmicb.2018.00383


  • Bouffaud, M.-L., Renoud, S., Dubost, A., Moënne-Loccoz, Y., Muller, D., 2018. 1-Aminocyclopropane-1-carboxylate deaminase producers associated to maize and other Poaceae species. Microbiome 6. https://doi.org/10.1186/s40168-018-0503-7


  • Bounaffaa, M., Florio, A., Le Roux, X., Jayet, P.-A., 2018. Economic and Environmental Analysis of Maize Inoculation by Plant Growth Promoting Rhizobacteria in the French Rhône-Alpes Region. Ecological Economics 146, 334-346. https://doi.org/10.1016/j.ecolecon.2017.11.009


  • Chiapusio, G., Jassey, V.E.J., Bellvert, F., Comte, G., Weston, L.A., Delarue, F., Buttler, A., Toussaint, M.L., Binet, P., 2018. Sphagnum Species Modulate their Phenolic Profiles and Mycorrhizal Colonization of Surrounding Andromeda polifolia along Peatland Microhabitats. Journal of Chemical Ecology. https://doi.org/10.1007/s10886-018-1023-4


  • Crème, A., Rumpel, C., Le Roux, X., Romian, A., Lan, T., Chabbi, A., 2018. Ley grassland under temperate climate had a legacy effect on soil organic matter quantity, biogeochemical signature and microbial activities. Soil Biology and Biochemistry 122, 203-210. https://doi.org/10.1016/j.soilbio.2018.04.018


  • Denet, E., Vasselon, V., Burdin, B., Nazaret, S., Favre-Bonté, S., 2018. Survival and growth of Stenotrophomonas maltophilia in free-living amoebae (FLA) and bacterial virulence properties. PLOS ONE 13, e0192308. https://doi.org/10.1371/journal.pone.0192308


  • Destoumieux-Garzón, D., Mavingui, P., Boetch, G., Boissier, J., Darriet, F., Duboz, P., Fritsch, C., Giraudoux, P., Le Roux, F., Morand, S., Paillard, C., Pontier, D., Sueur, C., Voituron, Y., 2018. The One Health concept: 10 years old and a long road ahead. Frontiers in Veterinary Science 5. https://doi.org/10.3389/fvets.2018.00014


  • Douam, F., Fusil, F., Enguehard, M., Dib, L., Nadalin, F., Schwaller, L., Hrebikova, G., Mancip, J., Mailly, L., Montserret, R., Ding, Q., Maisse, C., Carlot, E., Xu, K., Verhoeyen, E., Baumert, T.F., Ploss, A., Carbone, A., Cosset, F.-L., Lavillette, D., 2018. A protein coevolution method uncovers critical features of the Hepatitis C Virus fusion mechanism. PLOS Pathogens 14, e1006908. https://doi.org/10.1371/journal.ppat.1006908

  • Doussan, C., Bérard, A., Czarnes, S., Legendre, L., Legouis, J., Ruy, S., Guix, N., 2018. Do Plant Roots Modify The Soil Water Retention Properties of Rhizospheric Soil ? Evidences from the field and controlled conditions. AGU Fall Meeting Abstracts 23.


  • Gérard, E., De Goeyse, S., Hugoni, M., Agogué, H., Richard, L., Milesi, V., Guyot, F., Lecourt, L., Borensztajn, S., Joseph, M.-B., Leclerc, T., Sarazin, G., Jézéquel, D., Leboulanger, C., Ader, M., 2018. Key Role of Alphaproteobacteria and Cyanobacteria in the Formation of Stromatolites of Lake Dziani Dzaha (Mayotte, Western Indian Ocean). Frontiers in Microbiology 9, 796. https://doi.org/10.3389/fmicb.2018.00796


  • Ghedira, K., Harigua-Souiai, E., Hamda, C., Fournier, P., Pujic, P., Guesmi, S., Guizani, I., Miotello, G., Armengaud, J., Normand, P., Sghaier, H., 2018. The PEG-responding desiccome of the alder microsymbiont Frankia alni. Scientific Reports 8, 759. https://doi.org/10.1038/s41598-017-18839-0

  • Griesmann, M., Chang, Y., Liu, X., Song, Y., Haberer, G., Crook, M.B., Billault-Penneteau, B., Lauressergues, D., Keller, J., Imanishi, L., Roswanjaya, Y.P., Kohlen, W., Pujic, P., Battenberg, K., Alloisio, N., Liang, Y., Hilhorst, H., Salgado, M.G., Hocher, V., Gherbi, H., Svistoonoff, S., Doyle, J.J., He, S., Xu, Y., Xu, S., Qu, J., Gao, Q., Fang, X., Fu, Y., Normand, P., Berry, A.M., Wall, L.G., Ané, J.-M., Pawlowski, K., Xu, X., Yang, H., Spannagl, M., Mayer, K.F.X., Wong, G.K.-S., Parniske, M., Delaux, P.-M., Cheng, S., 2018. Phylogenomics reveals multiple losses of nitrogen-fixing root nodule symbiosis. Science (New York, N.Y.). https://doi.org/10.1126/science.aat1743


  • Guégan, M., Minard, G., Tran, F.H., Tran Van, V., Dubost, A., Valiente Moro, C., 2018. Short-term impacts of anthropogenic stressors on Aedes albopictus mosquito vector microbiota. FEMS Microbiology Ecology. https://doi.org/10.1093/femsec/fiy188


  • Guégan, M., Zouache, K., Démichel, C., Minard, G., Tran Van, V., Potier, P., Mavingui, P., Valiente Moro, C., 2018. The mosquito holobiont: fresh insight into mosquito-microbiota interactions. Microbiome 6, 49. https://doi.org/10.1186/s40168-018-0435-2


  • Guyonnet, J.P., Cantarel, A.A.M., Simon, L., Haichar, F.Z., 2018. Root exudation rate as functional trait involved in plant nutrient-use strategy classification. Ecology and Evolution 8, 8573-8581. https://doi.org/10.1002/ece3.4383


  • Guyonnet, J.P., Guillemet, M., Dubost, A., Simon, L., Ortet, P., Barakat, M., Heulin, T., Achouak, W., Haichar, F.Z., 2018. Plant Nutrient Resource Use Strategies Shape Active Rhizosphere Microbiota Through Root Exudation. Frontiers in Plant Science 9. https://doi.org/10.3389/fpls.2018.01662


  • Hugoni, M., Escalas, A., Bernard, C., Nicolas, S., Jézéquel, D., Vazzoler, F., Sarazin, G., Leboulanger, C., Bouvy, M., Got, P., Ader, M., Troussellier, M., Agogué, H., 2018. Spatiotemporal variations in microbial diversity across the three domains of life in a tropical thalassohaline lake (Dziani Dzaha, Mayotte Island). Molecular Ecology. https://doi.org/10.1111/mec.14901


  • Hugoni, M., Luis, P., Guyonnet, J., Haichar, F.Z., 2018. Plant host habitat and root exudates shape fungal diversity. Mycorrhiza 28, 451-463. https://doi.org/10.1007/s00572-018-0857-5


  • Ibrahim, N.A.G.A.A., Omar, M.N.A.M., El Heba, G.A.A., Moënne-Loccoz, Y., Prigent-Combaret, C., Muller, D., 2018. Draft Genome Sequence of Plant Growth-Promoting <i>Bacillus altitudinis</i> Strain PAE4. Microbiology Resource Announcements 7. https://doi.org/10.1128/MRA.00962-18


  • Jacquemond, I., Muggeo, A., Lamblin, G., Tristan, A., Gillet, Y., Bolze, P.A., Bes, M., Gustave, C.A., Rasigade, J.-P., Golfier, F., Ferry, T., Dubost, A., Abrouk, D., Barreto, S., Prigent-Combaret, C., Thioulouse, J., Lina, G., Muller, D., 2018. Complex ecological interactions of Staphylococcus aureus in tampons during menstruation. Scientific Reports 8, 9942. https://doi.org/10.1038/s41598-018-28116-3


  • Karasov, T.L., Almario, J., Friedemann, C., Ding, W., Giolai, M., Heavens, D., Kersten, S., Lundberg, D.S., Neumann, M., Regalado, J., Neher, R.A., Kemen, E., Weigel, D., 2018. Arabidopsis thaliana and Pseudomonas Pathogens Exhibit Stable Associations over Evolutionary Timescales. Cell Host & Microbe 24, 168-179.e4. https://doi.org/10.1016/j.chom.2018.06.011


  • Kuzmanović, N., Puławska, J., Smalla, K., Nesme, X., 2018. Agrobacterium rosae sp. nov., isolated from galls on different agricultural crops. Systematic and Applied Microbiology 41, 191-197. https://doi.org/10.1016/j.syapm.2018.01.004


  • Lavergne, C., Hugoni, M., Hubas, C., Debroas, D., Dupuy, C., Agogué, H., 2018. Diel Rhythm Does Not Shape the Vertical Distribution of Bacterial and Archaeal 16S rRNA Transcript Diversity in Intertidal Sediments: a Mesocosm Study. Microbial Ecology 75, 364-374. https://doi.org/10.1007/s00248-017-1048-1


  • Lavergne, C., Hugoni, M., Dupuy, C., Agogué, H., 2018. First evidence of the presence and activity of archaeal C3 group members in an Atlantic intertidal mudflat. Scientific Reports 8, 11790. https://doi.org/10.1038/s41598-018-30222-1


  • Le, H.T., Rochelle-Newall, E., Auda, Y., Ribolzi, O., Sengtaheuanghoung, O., Thébault, E., Soulileuth, B., Pommier, T., 2018. Vicinal land use change strongly drives stream bacterial community in a tropical montane catchment. FEMS Microbiology Ecology 94. https://doi.org/10.1093/femsec/fiy155


  • Lebeaux, D., Bergeron, E., Berthet, J., Djadi-Prat, J., Mouniée, D., Boiron, P., Lortholary, O., Rodriguez-Nava, V., 2018. Antibiotic susceptibility testing and species identification of Nocardia isolates: a retrospective analysis of data from a French expert laboratory, 2010-2015. Clinical Microbiology and Infection. https://doi.org/10.1016/j.cmi.2018.06.013


  • Lecomte, S.M., Achouak, W., Abrouk, D., Heulin, T., Nesme, X., Haichar, F.Z., 2018. Diversifying Anaerobic Respiration Strategies to Compete in the Rhizosphere. Frontiers in Environmental Science 6. https://doi.org/10.3389/fenvs.2018.00139


  • Leloup, J., Baude, M., Nunan, N., Meriguet, J., Dajoz, I., Le Roux, X., Raynaud, X., 2018. Unravelling the effects of plant species diversity and aboveground litter input on soil bacterial communities. Geoderma 317, 1-7. https://doi.org/10.1016/j.geoderma.2017.12.018


  • Lipeme Kouyi, G., Barraud, S., Becouze-Lareure, C., Blaha, D., Perrodin, Y., Wiest, L., Aubin, J.-B., Toussaint, J.-Y., Vareilles, S., Mandon, C., Bernardin-Souibgui, C., Marti, R., Bourgeois, É., Marjolet, L., Cournoyer, B., 2018. Caractérisation des sédiments d’un bassin de retenue-décantation des eaux pluviales et éléments pour la gestion. Techniques Sciences Méthodes 65-75. https://doi.org/10.1051/tsm/201809065


  • Lloyd, N.A., Nazaret, S., Barkay, T., 2018. Whole genome sequences to assess the link between antibiotic and metal resistance in three coastal marine bacteria isolated from the mummichog gastrointestinal tract. Marine Pollution Bulletin 135, 514-520. https://doi.org/10.1016/j.marpolbul.2018.07.051


  • Lurthy, T., Alloisio, N., Fournier, P., Anchisi, S., Ponsero, A., Normand, P., Pujic, P., Boubakri, H., 2018. Molecular response to nitrogen starvation by Frankia alni ACN14a revealed by transcriptomics and functional analysis with a fosmid library in Escherichia coli. Research in Microbiology 169, 90-100. https://doi.org/10.1016/j.resmic.2017.12.002


  • Mallon, C.A., Roux, X., Doorn, G.S., Dini-Andreote, F., Poly, F., Salles, J.F., 2018. The impact of failure: unsuccessful bacterial invasions steer the soil microbial community away from the invader’s niche. The ISME Journal 1. https://doi.org/10.1038/s41396-017-0003-y


  • Meyer, T., Vigouroux, A., Aumont-Nicaise, M., Comte, G., Vial, L., Lavire, C., Moréra, S., 2018. The plant defense signal galactinol is specifically used as a nutrient by the bacterial pathogen Agrobacterium fabrum. Journal of Biological Chemistry 293, 7930-7941. https://doi.org/10.1074/jbc.RA118.001856

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