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  • Assémien, F.L., Pommier, T., Gonnety, J.T., Gervaix, J., Le Roux, X., 2017. Adaptation of soil nitrifiers to very low nitrogen level jeopardizes the efficiency of chemical fertilization in west african moist savannas. Scientific Reports 7.

  • Bardon, C., Poly, F., Haichar, F.Z., Le Roux, X., Simon, L., Meiffren, G., Comte, G., Rouifed, S., Piola, F., 2017. Biological denitrification inhibition (BDI) with procyanidins induces modification of root traits, growth and N status in Fallopia x bohemica. Soil Biology and Biochemistry 107, 41-49.

  • Barot, S., Allard, V., Cantarel, A.A.M., Enjalbert, J., Gauffreteau, A., Goldringer, I., Lata, J.-C., Le Roux, X., Niboyet, A., Porcher, E., 2017. Designing mixtures of varieties for multifunctional agriculture with the help of ecology. A review. Agronomy for Sustainable Development 37, 13.

  • Bernardin Souibgui, C., Zoropogui, A., Voisin, J., Ribun, S., Vasselon, V., Pujic, P., Rodriguez-Nava, V., Belly, P., Cournoyer, B., Blaha, D., 2017. Virulence test using nematodes to prescreen <i>Nocardia</i> species capable of inducing neurodegeneration and behavioral disorders. PeerJ 5, e3823.

  • Bertin, Y., Habouzit, C., Dunière, L., Laurier, M., Durand, A., Duchez, D., Segura, A., Thévenot-Sergentet, D., Baruzzi, F., Chaucheyras-Durand, F., Forano, E., 2017. Lactobacillus reuteri suppresses E. coli O157:H7 in bovine ruminal fluid: Toward a pre-slaughter strategy to improve food safety? PLOS ONE 12, e0187229.

  • Blondel, C., Briset, L., Legay, N., Arnoldi, C., Poly, F., Clément, J.-C., Raveton, M., 2017. Assessing the dynamic changes of rhizosphere functionality of Zea mays plants grown in organochlorine contaminated soils. Journal of Hazardous Materials 331, 226-234.

  • Bouri, M., Gharsa, H.B., Vial, L., Lavire, C., Glick, B.R., Rhouma, A., 2017. A simple and stable method of tagging Agrobacterium fabrum C58 for environmental monitoring. Phytopathologia Mediterranea 56, 1-9.

  • Canouï, E., Blanc, K., Loubinoux, J., Valade, S., Hamard, C., Lefebvre, A., Amorim, S., Bébéar, C., Rodriguez-Nava, V., Lebeaux, D., Launay, O., Alifano, M., Rabbat, A., Kernéis, S., 2017. The value of molecular techniques to diagnose Ureaplasma urealyticum and Nocardia farcinica pleuropneumonia in a patient with diffuse large B-cell lymphoma. International Journal of Infectious Diseases 64, 93-95.

  • Chapalain, A., Groleau, M.-C., Le Guillouzer, S., Miomandre, A., Vial, L., Milot, S., Déziel, E., 2017. Interplay between 4-hydroxy-3-methyl-2-alkylquinoline and N-acyl-homoserine lactone signaling in a Burkholderia cepacia complex clinical strain. Frontiers in Microbiology 8.

  • Chonova, T., Labanowski, J., Cournoyer, B., Chardon, C., Keck, F., Laurent, É., Mondamert, L., Vasselon, V., Wiest, L., Bouchez, A., 2017. River biofilm community changes related to pharmaceutical loads emitted by a wastewater treatment plant. Environmental Science and Pollution Research 1-11.

  • Chonova, T., Lecomte, V., Bertrand-Krajewski, J.-L., Bouchez, A., Labanowski, J., Dagot, C., Lévi, Y., Perrodin, Y., Wiest, L., Gonzalez-Ospina, A., Cournoyer, B., Sebastian, C., 2017. The SIPIBEL project: treatment of hospital and urban wastewater in a conventional urban wastewater treatment plant. Environmental Science and Pollution Research 1-10.

  • Crampon, M., Cébron, A., Portet-Koltalo, F., Uroz, S., Le Derf, F., Bodilis, J., 2017. Low effect of phenanthrene bioaccessibility on its biodegradation in diffusely contaminated soil. Environmental Pollution 225, 663-673.

  • Denet, E., Coupat-Goutaland, B., Nazaret, S., Pélandakis, M., Favre-Bonté, S., 2017. Diversity of free-living amoebae in soils and their associated human opportunistic bacteria. Parasitology Research.

  • Dickson, L.B., Jiolle, D., Minard, G., Moltini-Conclois, I., Volant, S., Ghozlane, A., Bouchier, C., Ayala, D., Paupy, C., Moro, C.V., Lambrechts, L., 2017. Carryover effects of larval exposure to different environmental bacteria drive adult trait variation in a mosquito vector. Science Advances 3, e1700585.

  • Doré, J., Kohler, A., Dubost, A., Lindquist, E., Kuo, A., Grigoriev, I.V., Martin, F., Marmeisse, R., Gay, G., 2017. The ectomycorrhizal basidiomycete Hebeloma cylindrosporum undergoes early waves of transcriptional reprogramming prior to symbiotic structures differentiation. Environmental Microbiology 19, 1338–1354.

  • Douëllou, T., Delannoy, S., Ganet, S., Fach, P., Loukiadis, E., Montel, M.-C., Sergentet-Thevenot, D., 2017. Molecular characterization of O157:H7, O26:H11 and O103:H2 Shiga toxin-producing Escherichia coli isolated from dairy products. International Journal of Food Microbiology 253, 59-65.

  • Douëllou, T., Montel, M.C., Thevenot Sergentet, D., 2017. Invited review: Anti-adhesive properties of bovine oligosaccharides and bovine milk fat globule membrane-associated glycoconjugates against bacterial food enteropathogens. Journal of Dairy Science 100, 3348-3359.

  • El Moujahid, L., Le Roux, X., Michalet, S., Bellvert, F., Weigelt, A., Poly, F., 2017. Effect of plant diversity on the diversity of soil organic compounds. PLOS ONE 12, e0170494.

  • Eymery, M., Reix, P., Morfin, F., Doleans-Jordheim, A., Vrielynck, S., Jubin, V., Perceval, M., 2017. 164 Are viral respiratory infections a real issue in infants with cystic fibrosis: preliminary results of a prospective cohort study. Journal of Cystic Fibrosis, Abstracts of the 40th European Cystic Fibrosis Conference 16, Supplement 1, S108.

  • Florio, A., Pommier, T., Gervaix, J., Bérard, A., Le Roux, X., 2017. Soil C and N statuses determine the effect of maize inoculation by plant growth-promoting rhizobacteria on nitrifying and denitrifying communities. Scientific Reports 7.

  • Galia, W., Leriche, F., Cruveiller, S., Garnier, C., Navratil, V., Dubost, A., Blanquet-Diot, S., Thevenot-Sergentet, D., 2017. Strand-specific transcriptomes of Enterohemorrhagic Escherichia coli in response to interactions with ground beef microbiota: interactions between microorganisms in raw meat. BMC Genomics 18, 574.

  • Goubert, C., Henri, H., Minard, G., Valiente Moro, C., Mavingui, P., Vieira, C., Boulesteix, M., 2017. High-throughput sequencing of transposable element insertions suggests adaptive evolution of the invasive Asian tiger mosquito towards temperate environments. Molecular Ecology 26, 3968-3981.

  • Guyonnet, J.P., Vautrin, F., Meiffren, G., Labois, C., Cantarel, A.A.M., Michalet, S., Comte, G., Haichar, F.Z., 2017. The effects of plant nutritional strategy on soil microbial denitrification activity through rhizosphere primary metabolites. FEMS Microbiology Ecology 93.

  • Habbadi, K., Meyer, T., Vial, L., Gaillard, V., Benkirane, R., Benbouazza, A., Kerzaon, I., Achbani, E.H., Lavire, C., 2017. Essential oils of Origanum compactum and Thymus vulgaris exert a protective effect against the phytopathogen Allorhizobium vitis. Environmental Science and Pollution Research International 1-10.

  • Hay, A.E., Boubakri, H., Buonomo, A., Rey, M., Meiffren, G., Cotin-Galvan, L., Comte, G., Herrera-Belaroussi, A., 2017. Control of Endophytic Frankia Sporulation by Alnus Nodule Metabolites. Molecular Plant-Microbe Interactions 30, 205-214.

  • Hugoni, M., Vellet, A., Debroas, D., 2017. Unique and highly variable bacterial communities inhabiting the surface microlayer of an oligotrophic lake. Aquatic Microbial Ecology 79, 115-125.

  • Joffard, N., Legendre, L., Gibernau, M., Pascal, L., 2017. Differential Accumulation of Volatile Organic Compounds by Leaves and Roots of Two Guianese Philodendron Species, P. fragrantissimum Kunth and P. melinonii Brongn. Chemistry & Biodiversity 14, e1600415.

  • Jurburg, S.D., Nunes, I., Stegen, J.C., Le Roux, X., Priemé, A., Sørensen, S.J., Salles, J.F., 2017. Autogenic succession and deterministic recovery following disturbance in soil bacterial communities. Scientific Reports 7.

  • Kasrati, A., Alaoui Jamali, C., Spooner-Hart, R., Legendre, L., Leach, D., Abbad, A., 2017. Chemical Characterization and Biological Activities of Essential Oil Obtained from Mint Timija Cultivated under Mineral and Biological Fertilizers. Journal of Analytical Methods in Chemistry.

  • Kerangart, S., Cournoyer, B., Loukiadis, E., 2017. C-source metabolic profilings of foodborne Shiga-toxin producing E. coli match serogroup differentiations and highlight functional adaptations. International Journal of Food Microbiology.

  • Keshavarz-Tohid, V., Taheri, P., Muller, D., Prigent-Combaret, C., Vacheron, J., Taghavi, S.M., Tarighi, S., Moënne-Loccoz, Y., 2017. Phylogenetic diversity and antagonistic traits of root and rhizosphere pseudomonads of bean from Iran for controlling Rhizoctonia solani. Research in Microbiology 168, 760-772.

  • Larousse, M., Rancurel, C., Syska, C., Palero, F., Etienne, C., Industri, B., Nesme, X., Bardin, M., Galiana, E., 2017. Tomato root microbiota and Phytophthora parasitica-associated disease. Microbiome 5, 56.

  • Lassalle, F., Planel, R., Penel, S., Chapulliot, D., Barbe, V., Dubost, A., Calteau, A., Vallenet, D., Mornico, D., Bigot, T., Guéguen, L., Vial, L., Muller, D., Daubin, V., Nesme, X., 2017. Ancestral Genome Estimation Reveals the History of Ecological Diversification in Agrobacterium. Genome Biology and Evolution 9, 3413-3431.

  • Le Quéré, A., Tak, N., Gehlot, H.S., Lavire, C., Meyer, T., Chapulliot, D., Rathi, S., Sakrouhi, I., Rocha, G., Rohmer, M., Severac, D., Filali-Maltouf, A., Munive, J.-A., 2017. Genomic characterization of Ensifer aridi, a proposed new species of nitrogen-fixing rhizobium recovered from Asian, African and American deserts. BMC Genomics 18, 85.

  • Lebeaux, D., Freund, R., van Delden, C., Guillot, H., Marbus, S.D., Matignon, M., Van Wijngaerden, E., Douvry, B., De Greef, J., Vuotto, F., Tricot, L., Fernández-Ruiz, M., Dantal, J., Hirzel, C., Jais, J.-P., Rodriguez-Nava, V., Jacobs, F., Lortholary, O., Coussement, J., Anstey, J.R., Antoine, M., Ausselet, N., Belhaj, A., Boelens, J., de Beenhouwer, H., Denis, C., Ho, E., Ieven, M., Jonckheere, S., Knoop, C., le Moine, A., Rodriguez-Villalobos, H., Racapé, J., Roisin, S., Vandercam, B., Vander Zwalmen, M.-L., Vanfraechem, G., Van Laecke, S., Verhaegen, J., Barrou, B., Battistella, P., Bergeron, E., Bouvier, N., Caillard, S., Caumes, E., Chaussade, H., Chauvet, C., Crochette, R., Epailly, E., Essig, M., Gallien, S., Guillemain, R., Herel, C., Hoen, B., Kamar, N., le Gall, T., Levi, C., Lionet, A., Longuet, H., Melica, G., Miel, A., Morel, H., Ammar, S.O., Pattier, S., Peraldi, M.-N., Sayegh, J., Scemla, A., Senechal, A., Tourret, J., Boggian, K., Egli, A., Garzoni, C., Hoffman, M., Hirsch, H.H., Khanna, N., Manuel, O., Meylan, P., Mueller, N.J., Posfay-Barbe, K.M., Vu, D.-L., Weisser, M., Vollaard, A.M., Wunderink, H.F., 2017. Outcome and Treatment of Nocardiosis After Solid Organ Transplantation: New Insights From a European Study. Clinical Infectious Diseases 64, 1396-1405.

  • Lebot, V., Lawac, F., Michalet, S., Legendre, L., 2017. Characterization of taro [Colocasia esculenta (L.) Schott] germplasm for improved flavonoid composition and content. Plant Genetic Resources 15, 260-268.

  • Legay, N., Piton, G., Arnoldi, C., Bernard, L., Binet, M.-N., Mouhamadou, B., Pommier, T., Lavorel, S., Foulquier, A., Clément, J.-C., 2017. Soil legacy effects of climatic stress, management and plant functional composition on microbial communities influence the response of Lolium perenne to a new drought event. Plant and Soil 1-22.

  • Legendre, C., Hannetel, H., Ranc, A.-G., Bezza, W., Pages, L., Vandenesch, F., Tristan, A., Doleans-Jordheim, A., 2017. Listeria monocytogenes and ocular abscess: an atypical but yet potential association. International Ophthalmology 1-8.

  • Lemanceau, P., Blouin, M., Muller, D., Moënne-Loccoz, Y., 2017. Let the Core Microbiota Be Functional. Trends in Plant Science 22, 583-595.

  • Lhuissier, T., Mercier, P.-E., Michalet, S., Lebot, V., Legendre, L., 2017. Colorimetric assessment of kava (Piper methysticum Forst.) quality. Journal of Food Composition and Analysis 59, 27-34.

  • López-Lozano, N.E., Pereira e Silva, M.C., Poly, F., Guillaumaud, N., Van Elsas, J.D., Salles, J.F., 2017. Denitrifying bacterial communities display different temporal fluctuation patterns across Dutch agricultural soils. Antonie van Leeuwenhoek 1-13.

  • Loukiadis, E., Bièche-Terrier, C., Malayrat, C., Ferré, F., Cartier, P., Augustin, J.-C., 2017. Distribution of Escherichia coli O157:H7 in ground beef: Assessing the clustering intensity for an industrial-scale grinder and a low and localized initial contamination. International Journal of Food Microbiology 250, 75-81.

  • Marmeisse, R., Kellner, H., Fraissinet-Tachet, L., Luis, P., 2017. Discovering Protein-Coding Genes from the Environment: Time for the Eukaryotes? Trends in Biotechnology 35, 824-835.

  • Marti, R., Bécouze-Lareure, C., Ribun, S., Marjolet, L., Bernardin Souibgui, C., Aubin, J.-B., Lipeme Kouyi, G., Wiest, L., Blaha, D., Cournoyer, B., 2017. Bacteriome genetic structures of urban deposits are indicative of their origin and impacted by chemical pollutants. Scientific Reports 7.

  • Marti, R., Ribun, S., Aubin, J.-B., Colinon, C., Petit, S., Marjolet, L., Gourmelon, M., Schmitt, L., Breil, P., Cottet, M., Cournoyer, B., 2017. Human-Driven Microbiological Contamination of Benthic and Hyporheic Sediments of an Intermittent Peri-Urban River Assessed from MST and 16S rRNA Genetic Structure Analyses. Frontiers in Microbiology 8.

  • Michalet, S., Rouifed, S., Pellassa-Simon, T., Fusade-Boyer, M., Meiffren, G., Nazaret, S., Piola, F., 2017. Tolerance of Japanese knotweed s.l. to soil artificial polymetallic pollution: early metabolic responses and performance during vegetative multiplication. Environmental Science and Pollution Research 1-11.

  • Minard, G., Tran Van, V., Tran, F.H., Melaun, C., Klimpel, S., Koch, L.K., Ly Huynh Kim, K., Huynh Thi Thuy, T., Tran Ngoc, H., Potier, P., Mavingui, P., Valiente Moro, C., 2017. Identification of sympatric cryptic species of Aedes albopictus subgroup in Vietnam: new perspectives in phylosymbiosis of insect vector. Parasites & Vectors 10, 276.

  • Normand, P., Van Nguyen, T., Battenberg, K., Berry, A.M., Heuvel, B.V., Fernandez, M.P., Pawlowski, K., 2017. Proposal of'Candidatus Frankia californiensis', the uncultured symbiont in nitrogen-fixing root nodules of a phylogenetically broad group of hosts endemic to western North America. International journal of systematic and evolutionary microbiology 67, 3706-3715.

  • Pages-Monteiro, L., Marti, R., Commun, C., Alliot, N., Bardel, C., Meugnier, H., Perouse-de-Montclos, M., Reix, P., Durieu, I., Durupt, S., Vandenesch, F., Freney, J., Cournoyer, B., Doleans-Jordheim, A., 2017. Strong incidence of Pseudomonas aeruginosa on bacterial rrs and ITS genetic structures of cystic fibrosis sputa. PLOS ONE 12, e0173022.
  • Petar, P., Philippe, N., Anita, S., 2017. Nitrogenase and hydrogenase of the actinomycete Frankia: From gene expression to proteins. Journal of Microbiology Research 7, 79–92.

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