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Autres ...

2020

Article de revue


  • de Oliveira AB, et al. 2020. Short-term plant legacy alters the resistance and resilience of soil microbial communities exposed to heat disturbance in a Mediterranean calcareous soil. Ecological Indicators. 108:105740. doi: 10.1016/j.ecolind.2019.105740.

2019

Article de revue


  • Achouak W, et al. 2019. Plant hosts control microbial denitrification activity. FEMS Microbiology Ecology. 95. doi: 10.1093/femsec/fiz021.


  • Akanny E, et al. 2019. Development of uncoated near-spherical gold nanoparticles for the label-free quantification of Lactobacillus rhamnosus GG by surface-enhanced Raman spectroscopy. Analytical and Bioanalytical Chemistry. 411:5563-5576. doi: 10.1007/s00216-019-01938-4.


  • Alonso L, et al. 2019. Anthropization level of Lascaux Cave microbiome shown by regional-scale comparisons of pristine and anthropized caves. Molecular Ecology. 28:3383-3394. doi: 10.1111/mec.15144.


  • Alori ET, Babalola OO, Prigent-Combaret C. 2019. Impacts of Microbial Inoculants on the Growth and Yield of Maize Plant. The Open Agriculture Journal. 13. doi: 10.2174/1874331501913010001.


  • Aremu BR, Prigent-Combaret C, Babalola OO. 2019. Draft Genome Sequence of <i>Bacillus velezensis</i> Strain ZeaDK315Endo16 Newton, ILG. Microbiology Resource Announcements. 8:e00136-19, /mra/8/46/MRA.00136-19.atom. doi: 10.1128/MRA.00136-19.


  • Bernard C, et al. 2019. Very Low Phytoplankton Diversity in a Tropical Saline-Alkaline Lake, with Co-dominance of Arthrospira fusiformis (Cyanobacteria) and Picocystis salinarum (Chlorophyta). Microbial Ecology. doi: 10.1007/s00248-019-01332-8.


  • Béthencourt L, et al. 2019. Comparative genomics and proteogenomics highlight key molecular players involved in Frankia sporulation. Research in Microbiology. doi: 10.1016/j.resmic.2019.04.002.


  • Bethencourt L, et al. 2019. Draft genome sequences for three unisolated <i>Alnus</i> -infective <i>Frankia</i> Sp+ strains, AgTrS, AiOr and AvVan, the first sequenced <i>Frankia</i> strains able to sporulate <i>in-planta</i>. Journal of Genomics. 7:50-55. doi: 10.7150/jgen.35875.


  • Canouï E, et al. 2019. Syndrome d’activation macrophagique associé à une granulomatose et une infiltration lymphocytaire T CD4 diffuse révélant une nocardiose disséminée et une infection pulmonaire à Streptomyces spp. La Revue de Médecine Interne. doi: 10.1016/j.revmed.2019.04.013.


  • de Lajudie PM, et al. 2019. Minimal standards for the description of new genera and species of rhizobia and agrobacteria. International Journal of Systematic and Evolutionary Microbiology,. 69:1852-1863. doi: 10.1099/ijsem.0.003426.


  • Diel B, Dequivre M, Wisniewski‐Dyé F, Vial L, Hommais F. 2019. A novel plasmid-transcribed regulatory sRNA, QfsR, controls chromosomal polycistronic gene expression in Agrobacterium fabrum. Environmental Microbiology. 21:3063-3075. doi: 10.1111/1462-2920.14704.


  • Durand T, et al. 2019. Assessment of VITEK® MS IVD database V3.0 for identification of Nocardia spp. using two culture media and comparing direct smear and protein extraction procedures. European Journal of Clinical Microbiology & Infectious Diseases. doi: 10.1007/s10096-019-03758-x.


  • Eymery M, et al. 2019. Viral respiratory tract infections in young children with cystic fibrosis: a prospective full-year seasonal study. Virology Journal. 16:111. doi: 10.1186/s12985-019-1208-7.


  • Fabiańska I, Gerlach N, Almario J, Bucher M. 2019. Plant‐mediated effects of soil phosphorus on the root‐associated fungal microbiota in <i>Arabidopsis thaliana</i>. New Phytologist. 221:2123-2137. doi: 10.1111/nph.15538.


  • Florio A, Bréfort C, Gervaix J, Bérard A, Le Roux X. 2019. The responses of NO2−- and N2O-reducing bacteria to maize inoculation by the PGPR Azospirillum lipoferum CRT1 depend on carbon availability and determine soil gross and net N2O production. Soil Biology and Biochemistry. 136:107524. doi: 10.1016/j.soilbio.2019.107524.


  • Galland W, et al. 2019. Biological denitrification inhibition (BDI) in the field: A strategy to improve plant nutrition and growth. Soil Biology and Biochemistry. 136:107513. doi: 10.1016/j.soilbio.2019.06.009.


  • Gasmi M, et al. 2019. Chitinolytic actinobacteria isolated from an Algerian semi-arid soil: development of an antifungal chitinase-dependent assay and GH18 chitinase gene identification. Annals of Microbiology. 69:395-405. doi: 10.1007/s13213-018-1426-z.


  • Gomard Y, et al. 2019. Feral cats do not play a major role in leptospirosis epidemiology on Reunion Island. Epidemiology and Infection. 147. doi: 10.1017/S0950268819000190.


  • Habbadi K, et al. 2019. Characterization and phylogenetic diversity of Allorhizobium vitis isolated from grapevine in Morocco. Journal of Applied Microbiology. doi: 10.1111/jam.14523.


  • Keshavarz-Tohid V, et al. 2019. Genomic, phylogenetic and catabolic re-assessment of the Pseudomonas putida clade supports the delineation of Pseudomonas alloputida sp. nov., Pseudomonas inefficax sp. nov., Pseudomonas persica sp. nov., and Pseudomonas shirazica sp. nov. Systematic and Applied Microbiology. doi: 10.1016/j.syapm.2019.04.004.


  • Kopecky J, et al. 2019. Bacterial, archaeal and micro-eukaryotic communities characterize a disease-suppressive or conducive soil and a cultivar resistant or susceptible to common scab. Scientific Reports. 9:14883. doi: 10.1038/s41598-019-51570-6.


  • Lebot V, Michalet S, Legendre L. 2019. Kavalactones and Flavokavins Profiles Contribute to Quality Assessment of Kava (Piper methysticum G. Forst.), the Traditional Beverage of the Pacific. Beverages. 5:34. doi: 10.3390/beverages5020034.


  • Lepère C, et al. 2019. Diversity, spatial distribution and activity of fungi in freshwater ecosystems. PeerJ. 7:e6247. doi: 10.7717/peerj.6247.


  • Lloyd NA, Nazaret S, Barkay T. 2019. Genome-facilitated discovery of RND efflux pump-mediated resistance to cephalosporins in Vibrio spp. isolated from the mummichog fish gut. Journal of Global Antimicrobial Resistance. doi: 10.1016/j.jgar.2019.05.006.


  • Luis P, et al. 2019. Aedes albopictus mosquitoes host a locally structured mycobiota with evidence of reduced fungal diversity in invasive populations. Fungal Ecology. 39:257-266. doi: 10.1016/j.funeco.2019.02.004.


  • Luis P, et al. 2019. Contrasted ecological niches shape fungal and prokaryotic community structure in mangroves sediments. Environmental Microbiology. 21:1407-1424. doi: 10.1111/1462-2920.14571.


  • Ma B, et al. 2019. How do soil micro-organisms respond to N, P and NP additions? Application of the ecological framework of (co-)limitation by multiple resources. Journal of Ecology. doi: 10.1111/1365-2745.13179.


  • Maaloul A, et al. 2019. Effect of treated wastewater on growth and secondary metabolites production of two Eucalyptus species. Agricultural Water Management. 211:1-9. doi: 10.1016/j.agwat.2018.09.027.


  • Marty L, et al. 2019. Structural basis for two efficient modes of agropinic acid opine import into the bacterial pathogen Agrobacterium tumefaciens. Biochemical Journal. 476:165-178. doi: 10.1042/BCJ20180861.


  • Meyer T, et al. 2019. Ecological Conditions and Molecular Determinants Involved in Agrobacterium Lifestyle in Tumors. Frontiers in Plant Science. 10:978. doi: 10.3389/fpls.2019.00978.


  • Minard G, Tikhonov G, Ovaskainen O, Saastamoinen M. 2019. The microbiome of the Melitaea cinxia butterfly shows marked variation but is only little explained by the traits of the butterfly or its host plant. Environmental Microbiology. 21:4253-4269. doi: 10.1111/1462-2920.14786.


  • Miotto-Vilanova L, et al. 2019. Impact of Paraburkholderia phytofirmans PsJN on Grapevine Phenolic Metabolism. International Journal of Molecular Sciences. 20:5775. doi: 10.3390/ijms20225775.


  • Pujic P, et al. 2019. Omics of the early molecular dialogue between <i>Frankia alni</i> and <i>Alnus glutinosa</i> and the cellulase synton. Environmental Microbiology. doi: 10.1111/1462-2920.14606.


  • Rondeau M, et al. 2019. Biofilm-Constructing Variants of Paraburkholderia phytofirmans PsJN Outcompete the Wild-Type Form in Free-Living and Static Conditions but Not In Planta. Applied and Environmental Microbiology. 85. doi: 10.1128/AEM.02670-18.


  • Rosa E, Minard G, Lindholm J, Saastamoinen M. 2019. Moderate plant water stress improves larval development, and impacts immunity and gut microbiota of a specialist herbivore. PLOS ONE. 14:e0204292. doi: 10.1371/journal.pone.0204292.


  • Selak GV, et al. 2019. Whole-Genome Sequence of a Pantoea sp. Strain Isolated from an Olive (Olea europaea L.) Knot. Microbiology Resource Announcements. 8. doi: 10.1128/MRA.00978-19.


  • Theillet G, et al. 2019. Detection of chikungunya virus-specific IgM on laser-cut paper-based device using pseudo-particles as capture antigen. Journal of Medical Virology. 91:899-910. doi: 10.1002/jmv.25420.


  • Valette M, Rey M, Gerin F, Comte G, Wisniewski-Dyé F. 2019. A common metabolomic signature is observed upon inoculation of rice roots with various rhizobacteria. Journal of Integrative Plant Biology. doi: 10.1111/jipb.12810.

  • Vial L, Hommais F. 2019. Plasmid-chromosome crosstalks. Environmental Microbiology. doi: 10.1111/1462-2920.14880.


  • Xue L, Almario J, Fabiańska I, Saridis G, Bucher M. 2019. Dysfunction in the arbuscular mycorrhizal symbiosis has consistent but small effects on the establishment of the fungal microbiota in <i>Lotus japonicus</i>. New Phytologist. 224:409-420. doi: 10.1111/nph.15958.
Chapitre de livre


  • Achouak W, Haichar FZ. 2019. Stable Isotope Probing of Microbiota Structure and Function in the Plant Rhizosphere. In: Stable Isotope Probing: Methods and Protocols. Dumont, MG & Hernández García, M. Methods in Molecular Biology Springer: New York, NY p. 233-243. https://doi.org/10.1007/978-1-4939-9721-3_18 (Consulté novembre 5, 2019).
Livre

  • Faure D, Joly D, Salamitou S. 2019. 101 secrets de l'ADN.
Rapport

  • Gentzbittel L, et al. 2019. Résistance de la variété Platanor contre Ceratocystis platani. Agence Nationale de Sécurité Sanitaire de l'Alimentation, de l'Environnement et du Travail https://hal.archives-ouvertes.fr/hal-02272587 (Consulté novembre 5, 2019).

  • Silvie P, et al. 2019. Maladie du huanglongbing. Agence Nationale de Sécurité Sanitaire de l'Alimentation, de l'Environnement et du Travail https://hal.archives-ouvertes.fr/hal-02272585 (Consulté novembre 5, 2019).

2018

Article de revue


  • Alonso L, et al. 2018. Rock substrate rather than black stain alterations drives microbial community structure in the passage of Lascaux Cave. Microbiome. 6:216. doi: 10.1186/s40168-018-0599-9.


  • Bardon C, Misery B, Piola F, Poly F, Le Roux X. 2018. Control of soil N cycle processes by <i>Pteridium aquilinum</i> and <i>Erica cinerea</i> in heathlands along a pH gradient. Ecosphere. 9:e02426. doi: 10.1002/ecs2.2426.


  • Bernardin-Souibgui C, et al. 2018. Incidence of hydrological, chemical, and physical constraints on bacterial pathogens, <Emphasis Type="Italic">Nocardia</Emphasis> cells, and fecal indicator bacteria trapped in an urban stormwater detention basin in Chassieu, France. Environmental Science and Pollution Research. 1-22. doi: 10.1007/s11356-018-1994-2.


  • Bertrand C, Prigent-Combaret C, Gonzales-Coloma A. 2018. Chemistry, activity, and impact of plant biocontrol products. Environmental Science and Pollution Research. doi: 10.1007/s11356-018-3209-2.


  • Besset-Manzoni Y, Rieusset L, Joly P, Comte G, Prigent-Combaret C. 2018. Exploiting rhizosphere microbial cooperation for developing sustainable agriculture strategies. Environmental Science and Pollution Research. 1-18. doi: 10.1007/s11356-017-1152-2.

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