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Autres ...

2020

Article de revue


  • Akanny, E., Bonhommé, A., Commun, C., Doleans‐Jordheim, A., Farre, C., Bessueille, F., Bourgeois, S., Bordes, C., 2020. Surface‐enhanced Raman spectroscopy using uncoated gold nanoparticles for bacteria discrimination. Journal of Raman Spectroscopy jrs.5827. https://doi.org/10.1002/jrs.5827


  • Cantarel, A.A.M., Rouifed, S., Simon, L., Bourg, J., Gervaix, J., Blazère, L., Poussineau, S., Creuzé des Châtelliers, C., Piola, F., 2020. In Nitrate-Rich Soil, Fallopia x bohemica Modifies Functioning of N Cycle Compared to Native Monocultures. Diversity 12, 156. https://doi.org/10.3390/d12040156


  • Czarnes, S., Mercier, P.-E., Lemoine, D.G., Hamzaoui, J., Legendre, L., 2020. Impact of soil water content on maize responses to the plant growth-promoting rhizobacterium Azospirillum lipoferum CRT1. Journal of Agronomy and Crop Science n/a. https://doi.org/10.1111/jac.12399


  • de Oliveira, A.B., Cantarel, A.A.M., Seiller, M., Florio, A., Bérard, A., Hinsinger, P., Le Cadre, E., 2020. Short-term plant legacy alters the resistance and resilience of soil microbial communities exposed to heat disturbance in a Mediterranean calcareous soil. Ecological Indicators 108, 105740. https://doi.org/10.1016/j.ecolind.2019.105740


  • Denet, E., Espina-Benitez, M.B., Pitault, I., Pollet, T., Blaha, D., Bolzinger, M.-A., Rodriguez-Nava, V., Briançon, S., 2020. Metal oxide nanoparticles for the decontamination of toxic chemical and biological compounds. International Journal of Pharmaceutics 583, 119373. https://doi.org/10.1016/j.ijpharm.2020.119373


  • Gaudino, M., Aurine, N., Dumont, C., Fouret, J., Ferren, M., Mathieu, C., Reynard, O., Volchkov, V.E., Legras-Lachuer, C., Georges-Courbot, M.-C., Horvat, B., 2020. High Pathogenicity of Nipah Virus from <i>Pteropus lylei</i> Fruit Bats, Cambodia. Emerging Infectious Diseases 26, 104-113. https://doi.org/10.3201/eid2601.191284


  • Goulas, A., Belhadi, D., Descamps, A., Andremont, A., Benoit, P., Courtois, S., Dagot, C., Grall, N., Makowski, D., Nazaret, S., Nélieu, S., Patureau, D., Petit, F., Roose-Amsaleg, C., Vittecoq, M., Livoreil, B., Laouénan, C., 2020. How effective are strategies to control the dissemination of antibiotic resistance in the environment? A systematic review. Environmental Evidence 9, 4. https://doi.org/10.1186/s13750-020-0187-x


  • Guégan, M., Tran Van, V., Martin, E., Minard, G., Tran, F.H., Fel, B., Hay, A.-E., Simon, L., Barakat, M., Potier, P., Haichar, F.Z., Valiente Moro, C., 2020. Who is eating fructose within the <i>Aedes albopictus</i> gut microbiota? Environmental Microbiology 1462-2920.14915. https://doi.org/10.1111/1462-2920.14915


  • Gueneau, R., Blanchet, D., Rodriguez-Nava, V., Bergeron, E., Soulier, M., Bestandji, N., Demar, M., Couppie, P., Blaizot, R., 2020. Actinomycetoma caused by Gordonia westfalica: first reported case of human infection. New Microbes and New Infections 100658. https://doi.org/10.1016/j.nmni.2020.100658


  • Hay, A.-E., Herrera-Belaroussi, A., Rey, M., Fournier, P., Normand, P., Boubakri, H., 2020. Feedback Regulation of N Fixation in <i>Frankia-Alnus</i> Symbiosis Through Amino Acids Profiling in Field and Greenhouse Nodules. Molecular Plant-Microbe Interactions® 33, 499-508. https://doi.org/10.1094/MPMI-10-19-0289-R


  • Laffite, A., Florio, A., Andrianarisoa, K.S., Creuze des Chatelliers, C., Schloter‐Hai, B., Ndaw, S.M., Periot, C., Schloter, M., Zeller, B., Poly, F., Le Roux, X., 2020. Biological inhibition of soil nitrification by forest tree species affects <i>Nitrobacter</i> populations. Environmental Microbiology 1462-2920.14905. https://doi.org/10.1111/1462-2920.14905


  • Le, H.T., Rochelle‐Newall, E., Ribolzi, O., Janeau, J.L., Huon, S., Latsachack, K., Pommier, T., 2020. Land use strongly influences soil organic carbon and bacterial community export in runoff in tropical uplands‐. Land Degradation & Development 31, 118-132. https://doi.org/10.1002/ldr.3433


  • Massip, C., Coullaud-Gamel, M., Gaudru, C., Amoureux, L., Doleans-Jordheim, A., Hery-Arnaud, G., Marchandin, H., Oswald, E., Segonds, C., Guet-Revillet, H., 2020. In vitro activity of 20 antibiotics against Cupriavidus clinical strains. Journal of Antimicrobial Chemotherapy dkaa066. https://doi.org/10.1093/jac/dkaa066


  • Sutherland, W.J., Dias, M.P., Dicks, L.V., Doran, H., Entwistle, A.C., Fleishman, E., Gibbons, D.W., Hails, R., Hughes, A.C., Hughes, J., Kelman, R., Le Roux, X., LeAnstey, B., Lickorish, F.A., Maggs, L., Pearce-Higgins, J.W., Peck, L.S., Pettorelli, N., Pretty, J., Spalding, M.D., Tonneijck, F.H., Wentworth, J., Thornton, A., 2020. A Horizon Scan of Emerging Global Biological Conservation Issues for 2020. Trends in Ecology & Evolution 35, 81-90. https://doi.org/10.1016/j.tree.2019.10.010


  • Valente, J., Gerin, F., Le Gouis, J., Moënne‐Loccoz, Y., Prigent–Combaret, C., 2020. Ancient wheat varieties have a higher ability to interact with plant growth‐promoting rhizobacteria. Plant, Cell & Environment 43, 246-260. https://doi.org/10.1111/pce.13652


  • Vigouroux, A., Doré, J., Marty, L., Aumont-Nicaise, M., Legrand, P., Dessaux, Y., Vial, L., Moréra, S., 2020. Import pathways of the mannityl-opines into the bacterial pathogen Agrobacterium tumefaciens: structural, affinity and in vivo approaches. Biochemical Journal 477, 615-628. https://doi.org/10.1042/BCJ20190886
Rapport

  • Verdin, E., Gentit, P., Steyer, S., Wetzel, T., Le Bourgeois, T., Balesdent, M.-H., Binet, F., Biondi, A., Castagnone, P., Deberdt, P., Desneux, N., Desprez Loustau, M.L., Escobar Gutiérrez, A., Gentzbittel, L., Jactel, H., Makowski, D., Monty, A., Navajas, M., Nesme, X., Robin, M.-H., Verheggen, F., Tayeh, C., 2020. Évaluation du risque simplifiée du tomato brown rugose fruit virus pour la France métropolitaine (Contract). Agence nationale de sécurité sanitaire de l'alimentation, de l'environnement et du travail.

2019

Article de revue


  • Achouak, W., Abrouk, D., Guyonnet, J., Barakat, M., Ortet, P., Simon, L., Lerondelle, C., Heulin, T., Haichar, F.Z., 2019. Plant hosts control microbial denitrification activity. FEMS Microbiology Ecology 95. https://doi.org/10.1093/femsec/fiz021


  • Akanny, E., Bonhommé, A., Commun, C., Doleans-Jordheim, A., Bessueille, F., Bourgeois, S., Bordes, C., 2019. Development of uncoated near-spherical gold nanoparticles for the label-free quantification of Lactobacillus rhamnosus GG by surface-enhanced Raman spectroscopy. Analytical and Bioanalytical Chemistry 411, 5563-5576. https://doi.org/10.1007/s00216-019-01938-4


  • Alonso, L., Pommier, T., Kaufmann, B., Dubost, A., Chapulliot, D., Doré, J., Douady, C.J., Moënne‐Loccoz, Y., 2019. Anthropization level of Lascaux Cave microbiome shown by regional-scale comparisons of pristine and anthropized caves. Molecular Ecology 28, 3383-3394. https://doi.org/10.1111/mec.15144


  • Alori, E.T., Babalola, O.O., Prigent-Combaret, C., 2019. Impacts of Microbial Inoculants on the Growth and Yield of Maize Plant. The Open Agriculture Journal 13. https://doi.org/10.2174/1874331501913010001


  • Aremu, B.R., Prigent-Combaret, C., Babalola, O.O., 2019. Draft Genome Sequence of <i>Bacillus velezensis</i> Strain ZeaDK315Endo16. Microbiology Resource Announcements 8, e00136-19, /mra/8/46/MRA.00136-19.atom. https://doi.org/10.1128/MRA.00136-19


  • Assémien, F.L., Cantarel, A.A.M., Florio, A., Lerondelle, C., Pommier, T., Gonnety, J.T., Le Roux, X., 2019. Different groups of nitrite-reducers and N2O-reducers have distinct ecological niches and functional roles in West African cultivated soils. Soil Biology and Biochemistry 129, 39-47. https://doi.org/10.1016/j.soilbio.2018.11.003


  • Bernard, C., Escalas, A., Villeriot, N., Agogué, H., Hugoni, M., Duval, C., Carré, C., Got, P., Sarazin, G., Jézéquel, D., Leboulanger, C., Grossi, V., Ader, M., Troussellier, M., 2019. Very Low Phytoplankton Diversity in a Tropical Saline-Alkaline Lake, with Co-dominance of Arthrospira fusiformis (Cyanobacteria) and Picocystis salinarum (Chlorophyta). Microbial Ecology. https://doi.org/10.1007/s00248-019-01332-8


  • Béthencourt, L., Boubakri, H., Taib, N., Normand, P., Armengaud, J., Fournier, P., Brochier-Armanet, C., Herrera-Belaroussi, A., 2019. Comparative genomics and proteogenomics highlight key molecular players involved in Frankia sporulation. Research in Microbiology. https://doi.org/10.1016/j.resmic.2019.04.002


  • Bethencourt, L., Vautrin, F., Taib, N., Dubost, A., Castro-Garcia, L., Imbaud, O., Abrouk, D., Fournier, P., Briolay, J., Nguyen, A., Normand, P., Fernandez, M.P., Brochier-Armanet, C., Herrera-Belaroussi, A., 2019. Draft genome sequences for three unisolated <i>Alnus</i> -infective <i>Frankia</i> Sp+ strains, AgTrS, AiOr and AvVan, the first sequenced <i>Frankia</i> strains able to sporulate <i>in-planta</i>. Journal of Genomics 7, 50-55. https://doi.org/10.7150/jgen.35875


  • Canouï, E., Ingen-Housz-Oro, S., Ortonne, N., Lebeaux, D., Rodriguez-Nava, V., Godeau, B., Mahévas, M., 2019. Syndrome d’activation macrophagique associé à une granulomatose et une infiltration lymphocytaire T CD4 diffuse révélant une nocardiose disséminée et une infection pulmonaire à Streptomyces spp. La Revue de Médecine Interne. https://doi.org/10.1016/j.revmed.2019.04.013


  • Capdeville, C., Pommier, T., Gervaix, J., Fromard, F., Rols, J.-L., Leflaive, J., 2019. Mangrove Facies Drives Resistance and Resilience of Sediment Microbes Exposed to Anthropic Disturbance. Frontiers in Microbiology 9, 3337. https://doi.org/10.3389/fmicb.2018.03337


  • Ciampa, A., Dell'Abate, M.T., Florio, A., Tarricone, L., Di Gennaro, D., Picone, G., Trimigno, A., Capozzi, F., Benedetti, A., 2019. Combined magnetic resonance imaging and high resolution spectroscopy approaches to study the fertilization effects on metabolome, morphology and yeast community of wine grape berries, cultivar Nero di Troia. Food Chemistry 274, 831-839. https://doi.org/10.1016/j.foodchem.2018.09.056


  • de Lajudie, P.M., Andrews, M., Ardley, J., Eardly, B., Jumas-Bilak, E., Kuzmanović, N., Lassalle, F., Lindström, K., Mhamdi, R., Martínez-Romero, E., Moulin, L., Mousavi, S.A., Nesme, X., Peix, A., Puławska, J., Steenkamp, E., Stępkowski, T., Tian, C.-F., Vinuesa, P., Wei, G., Willems, A., Zilli, J., Young, P., 2019. Minimal standards for the description of new genera and species of rhizobia and agrobacteria. International Journal of Systematic and Evolutionary Microbiology 69, 1852-1863. https://doi.org/10.1099/ijsem.0.003426


  • Diel, B., Dequivre, M., Wisniewski‐Dyé, F., Vial, L., Hommais, F., 2019. A novel plasmid-transcribed regulatory sRNA, QfsR, controls chromosomal polycistronic gene expression in Agrobacterium fabrum. Environmental Microbiology 21, 3063-3075. https://doi.org/10.1111/1462-2920.14704


  • Durand, T., Vautrin, F., Bergeron, E., Girard, V., Polsinelli, S., Monnin, V., Durand, G., Dauwalder, O., Dumitrescu, O., Laurent, F., Rodríguez-Nava, V., 2019. Assessment of VITEK® MS IVD database V3.0 for identification of Nocardia spp. using two culture media and comparing direct smear and protein extraction procedures. European Journal of Clinical Microbiology & Infectious Diseases. https://doi.org/10.1007/s10096-019-03758-x


  • Eymery, M., Morfin, F., Doleans-Jordheim, A., Perceval, M., Ohlmann, C., Mainguy, C., Reix, P., 2019. Viral respiratory tract infections in young children with cystic fibrosis: a prospective full-year seasonal study. Virology Journal 16, 111. https://doi.org/10.1186/s12985-019-1208-7


  • Fabiańska, I., Gerlach, N., Almario, J., Bucher, M., 2019. Plant‐mediated effects of soil phosphorus on the root‐associated fungal microbiota in <i>Arabidopsis thaliana</i>. New Phytologist 221, 2123-2137. https://doi.org/10.1111/nph.15538


  • Florio, A., Bréfort, C., Gervaix, J., Bérard, A., Le Roux, X., 2019. The responses of NO2−- and N2O-reducing bacteria to maize inoculation by the PGPR Azospirillum lipoferum CRT1 depend on carbon availability and determine soil gross and net N2O production. Soil Biology and Biochemistry 136, 107524. https://doi.org/10.1016/j.soilbio.2019.107524


  • Galland, W., Piola, F., Burlet, A., Mathieu, C., Nardy, M., Poussineau, S., Blazère, L., Gervaix, J., Puijalon, S., Simon, L., Haichar, F.Z., 2019. Biological denitrification inhibition (BDI) in the field: A strategy to improve plant nutrition and growth. Soil Biology and Biochemistry 136, 107513. https://doi.org/10.1016/j.soilbio.2019.06.009


  • Gasmi, M., Kitouni, M., Carro, L., Pujic, P., Normand, P., Boubakri, H., 2019. Chitinolytic actinobacteria isolated from an Algerian semi-arid soil: development of an antifungal chitinase-dependent assay and GH18 chitinase gene identification. Annals of Microbiology 69, 395-405. https://doi.org/10.1007/s13213-018-1426-z


  • Gomard, Y., Lagadec, E., Humeau, L., Pinet, P., Bureau, S., Da Silva, D., Turpin, M., Soulaimana Mattoir, Y., Georger, S., Mavingui, P., Tortosa, P., 2019. Feral cats do not play a major role in leptospirosis epidemiology on Reunion Island. Epidemiology and Infection 147. https://doi.org/10.1017/S0950268819000190


  • Habbadi, K., Duplay, Q., Chapulliot, D., Kerzaon, I., Benkirane, R., Benbouazza, A., Wisniewski-Dyé, F., Lavire, C., Achbani, E.H., Vial, L., 2019. Characterization and phylogenetic diversity of Allorhizobium vitis isolated from grapevine in Morocco. Journal of Applied Microbiology. https://doi.org/10.1111/jam.14523


  • Keshavarz-Tohid, V., Vacheron, J., Dubost, A., Prigent-Combaret, C., Taheri, P., Tarighi, S., Taghavi, S.M., Moënne-Loccoz, Y., Muller, D., 2019. Genomic, phylogenetic and catabolic re-assessment of the Pseudomonas putida clade supports the delineation of Pseudomonas alloputida sp. nov., Pseudomonas inefficax sp. nov., Pseudomonas persica sp. nov., and Pseudomonas shirazica sp. nov. Systematic and Applied Microbiology. https://doi.org/10.1016/j.syapm.2019.04.004


  • Kopecky, J., Samkova, Z., Sarikhani, E., Kyselková, M., Omelka, M., Kristufek, V., Divis, J., Grundmann, G., Moënne-Loccoz, Y., Sagova-Mareckova, M., 2019. Bacterial, archaeal and micro-eukaryotic communities characterize a disease-suppressive or conducive soil and a cultivar resistant or susceptible to common scab. Scientific Reports 9, 14883. https://doi.org/10.1038/s41598-019-51570-6


  • Lebot, V., Michalet, S., Legendre, L., 2019. Kavalactones and Flavokavins Profiles Contribute to Quality Assessment of Kava (Piper methysticum G. Forst.), the Traditional Beverage of the Pacific. Beverages 5, 34. https://doi.org/10.3390/beverages5020034


  • Lepère, C., Domaizon, I., Humbert, J.-F., Jardillier, L., Hugoni, M., Debroas, D., 2019. Diversity, spatial distribution and activity of fungi in freshwater ecosystems. PeerJ 7, e6247. https://doi.org/10.7717/peerj.6247


  • Li, M., Wei, Z., Wang, J., Jousset, A., Friman, V.‐P., Xu, Y., Shen, Q., Pommier, T., 2019. Facilitation promotes invasions in plant‐associated microbial communities. Ecology Letters 22, 149-158. https://doi.org/10.1111/ele.13177


  • Lloyd, N.A., Nazaret, S., Barkay, T., 2019. Genome-facilitated discovery of RND efflux pump-mediated resistance to cephalosporins in Vibrio spp. isolated from the mummichog fish gut. Journal of Global Antimicrobial Resistance. https://doi.org/10.1016/j.jgar.2019.05.006


  • Luis, P., Saint‐Genis, G., Vallon, L., Bourgeois, C., Bruto, M., Marchand, C., Record, E., Hugoni, M., 2019. Contrasted ecological niches shape fungal and prokaryotic community structure in mangroves sediments. Environmental Microbiology 21, 1407-1424. https://doi.org/10.1111/1462-2920.14571


  • Luis, P., Vallon, L., Tran, F.H., Hugoni, M., Tran Van, V., Mavingui, P., Minard, G., Valiente Moro, C., 2019. Aedes albopictus mosquitoes host a locally structured mycobiota with evidence of reduced fungal diversity in invasive populations. Fungal Ecology 39, 257-266. https://doi.org/10.1016/j.funeco.2019.02.004


  • Ma, B., Zhou, X., Zhang, Q., Qin, M., Hu, L., Yang, K., Xie, Z., Ma, W., Chen, B., Feng, H., Liu, Y., Du, G., Ma, X., Le Roux, X., 2019. How do soil micro-organisms respond to N, P and NP additions? Application of the ecological framework of (co-)limitation by multiple resources. Journal of Ecology. https://doi.org/10.1111/1365-2745.13179


  • Maaloul, A., Michalet, S., Saadaoui, E., Ghzel, N., Bekir, J., Romdhane, C.B., Mars, M., Dijoux-Franca, M.-G., Romdhane, M., 2019. Effect of treated wastewater on growth and secondary metabolites production of two Eucalyptus species. Agricultural Water Management 211, 1-9. https://doi.org/10.1016/j.agwat.2018.09.027


  • Maaloul, A., Sancho, M.V.E.R.D.E.G.U.E.R., Oddo, M., Saadaoui, E., Jebri, M., Michalet, S., Dijoux Franca, M.G., Mars, M., Romdhane, M., 2019. Effect of Short and Long Term Irrigation with Treated Wastewater on Chemical Composition and Herbicidal Activity of Eucalyptus camaldulensis Dehn. Essential Oils. Notulae Botanicae Horti Agrobotanici Cluj-Napoca 47, 1374-1381. https://doi.org/10.15835/nbha47411374

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