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Journal Article

  • Almario J, et al. 2017. Distribution of 2,4-diacetylphloroglucinol biosynthetic genes among the Pseudomonas spp. reveals unexpected polyphyletism. Frontiers in Microbiology. 8. doi: 10.3389/fmicb.2017.01218.

  • Assémien FL, Pommier T, Gonnety JT, Gervaix J, Le Roux X. 2017. Adaptation of soil nitrifiers to very low nitrogen level jeopardizes the efficiency of chemical fertilization in west african moist savannas. Scientific Reports. 7. doi: 10.1038/s41598-017-10185-5.

  • Bardon C, et al. 2017. Biological denitrification inhibition (BDI) with procyanidins induces modification of root traits, growth and N status in Fallopia x bohemica. Soil Biology and Biochemistry. 107:41-49. doi: 10.1016/j.soilbio.2016.12.009.

  • Barot S, et al. 2017. Designing mixtures of varieties for multifunctional agriculture with the help of ecology. A review. Agronomy for Sustainable Development. 37:13. doi: 10.1007/s13593-017-0418-x.

  • Bertin Y, et al. 2017. Lactobacillus reuteri suppresses E. coli O157:H7 in bovine ruminal fluid: Toward a pre-slaughter strategy to improve food safety? PLOS ONE. 12:e0187229. doi: 10.1371/journal.pone.0187229.

  • Blondel C, et al. 2017. Assessing the dynamic changes of rhizosphere functionality of Zea mays plants grown in organochlorine contaminated soils. Journal of Hazardous Materials. 331:226-234. doi: 10.1016/j.jhazmat.2017.02.056.

  • Bouri M, et al. 2017. A simple and stable method of tagging Agrobacterium fabrum C58 for environmental monitoring. Phytopathologia Mediterranea. 56:1-9. doi: 10.14601/Phytopathol_Mediterr-18072.

  • Chapalain A, et al. 2017. Interplay between 4-hydroxy-3-methyl-2-alkylquinoline and N-acyl-homoserine lactone signaling in a Burkholderia cepacia complex clinical strain. Frontiers in Microbiology. 8. doi: 10.3389/fmicb.2017.01021.

  • Chonova T, et al. 2017. The SIPIBEL project: treatment of hospital and urban wastewater in a conventional urban wastewater treatment plant. Environmental Science and Pollution Research. 1-10. doi: 10.1007/s11356-017-9302-0.

  • Crampon M, et al. 2017. Low effect of phenanthrene bioaccessibility on its biodegradation in diffusely contaminated soil. Environmental Pollution. 225:663-673. doi: 10.1016/j.envpol.2017.03.053.

  • Denet E, Coupat-Goutaland B, Nazaret S, Pélandakis M, Favre-Bonté S. 2017. Diversity of free-living amoebae in soils and their associated human opportunistic bacteria. Parasitology Research. doi: 10.1007/s00436-017-5632-6.

  • Dickson LB, et al. 2017. Carryover effects of larval exposure to different environmental bacteria drive adult trait variation in a mosquito vector. Science Advances. 3:e1700585. doi: 10.1126/sciadv.1700585.

  • Doré J, et al. 2017. The ectomycorrhizal basidiomycete Hebeloma cylindrosporum undergoes early waves of transcriptional reprogramming prior to symbiotic structures differentiation. Environmental Microbiology. n/a-n/a. doi: 10.1111/1462-2920.13670.

  • El Moujahid L, et al. 2017. Effect of plant diversity on the diversity of soil organic compounds. PLOS ONE. 12:e0170494. doi: 10.1371/journal.pone.0170494.

  • Eymery M, et al. 2017. 164 Are viral respiratory infections a real issue in infants with cystic fibrosis: preliminary results of a prospective cohort study. Journal of Cystic Fibrosis. 16, Supplement 1:S108. doi: 10.1016/S1569-1993(17)30528-3.

  • Florio A, Pommier T, Gervaix J, Bérard A, Le Roux X. 2017. Soil C and N statuses determine the effect of maize inoculation by plant growth-promoting rhizobacteria on nitrifying and denitrifying communities. Scientific Reports. 7. doi: 10.1038/s41598-017-08589-4.

  • Galia W, et al. 2017. Strand-specific transcriptomes of Enterohemorrhagic Escherichia coli in response to interactions with ground beef microbiota: interactions between microorganisms in raw meat. BMC Genomics. 18:574. doi: 10.1186/s12864-017-3957-2.

  • Goubert C, et al. 2017. High-throughput sequencing of transposable element insertions suggests adaptive evolution of the invasive Asian tiger mosquito towards temperate environments. Molecular Ecology. 26:3968-3981. doi: 10.1111/mec.14184.

  • Guyonnet JP, et al. 2017. The effects of plant nutritional strategy on soil microbial denitrification activity through rhizosphere primary metabolites. FEMS Microbiology Ecology. 93. doi: 10.1093/femsec/fix022.

  • Hay AE, et al. 2017. Control of Endophytic Frankia Sporulation by Alnus Nodule Metabolites. Molecular Plant-Microbe Interactions. 30:205-214. doi: 10.1094/MPMI-11-16-0235-R.

  • Hugoni M, Vellet A, Debroas D. 2017. Unique and highly variable bacterial communities inhabiting the surface microlayer of an oligotrophic lake. Aquatic Microbial Ecology. 79:115-125. doi: 10.3354/ame01825.

  • Keshavarz-Tohid V, et al. 2017. Phylogenetic diversity and antagonistic traits of root and rhizosphere pseudomonads of a bean from Iran for controlling Rhizoctonia solani. Research in Microbiology. doi: 10.1016/j.resmic.2017.08.002.

  • Le Quéré A, et al. 2017. Genomic characterization of Ensifer aridi, a proposed new species of nitrogen-fixing rhizobium recovered from Asian, African and American deserts. BMC Genomics. 18:85. doi: 10.1186/s12864-016-3447-y.

  • Legay N, et al. 2017. Soil legacy effects of climatic stress, management and plant functional composition on microbial communities influence the response of Lolium perenne to a new drought event. Plant and Soil. doi: 10.1007/s11104-017-3403-x.
  • Legendre C, et al. 2017. Listeria monocytogenes and ocular abscess: an atypical but yet potential association. International Ophthalmology. 1-8. doi: 10.1007/s10792-017-0723-z.

  • Lemanceau P, Blouin M, Muller D, Moënne-Loccoz Y. 2017. Let the Core Microbiota Be Functional. Trends in Plant Science. 22:583-595. doi: 10.1016/j.tplants.2017.04.008.

  • López-Lozano NE, et al. 2017. Denitrifying bacterial communities display different temporal fluctuation patterns across Dutch agricultural soils. Antonie van Leeuwenhoek. 1-13. doi: 10.1007/s10482-017-0898-3.

  • Marti R, et al. 2017. Bacteriome genetic structures of urban deposits are indicative of their origin and impacted by chemical pollutants. Scientific Reports. 7. doi: 10.1038/s41598-017-13594-8.

  • Michalet S, et al. 2017. Tolerance of Japanese knotweed s.l. to soil artificial polymetallic pollution: early metabolic responses and performance during vegetative multiplication. Environmental Science and Pollution Research. 1-11. doi: 10.1007/s11356-017-9716-8.

  • Minard G, et al. 2017. Identification of sympatric cryptic species of Aedes albopictus subgroup in Vietnam: new perspectives in phylosymbiosis of insect vector. Parasites & Vectors. 10:276. doi: 10.1186/s13071-017-2202-9.

  • Pages-Monteiro L, et al. 2017. Strong incidence of Pseudomonas aeruginosa on bacterial rrs and ITS genetic structures of cystic fibrosis sputa. PLOS ONE. 12:e0173022. doi: 10.1371/journal.pone.0173022.

  • Pham HN, et al. 2017. Impact of metal stress on the production of secondary metabolites in Pteris vittata L. and associated rhizosphere bacterial communities. Environmental Science and Pollution Research. 1-16. doi: 10.1007/s11356-017-9167-2.

  • René-Martellet M, et al. 2017. Bacterial microbiota associated with Rhipicephalus sanguineus (s.l.) ticks from France, Senegal and Arizona. Parasites & Vectors. 10:416. doi: 10.1186/s13071-017-2352-9.

  • Roy M, et al. 2017. Alder and the Golden Fleece: high diversity of Frankia and ectomycorrhizal fungi revealed from Alnus glutinosa subsp. barbata roots close to a Tertiary and glacial refugium. PeerJ. 5:e3479. doi: 10.7717/peerj.3479.

  • Salles JF, et al. 2017. Successional patterns of key genes and processes involved in the microbial nitrogen cycle in a salt marsh chronosequence. Biogeochemistry. 1-17. doi: 10.1007/s10533-017-0296-y.

  • Sánchez-Herrera K, et al. 2017. Molecular identification of Nocardia species using the sod A gene. New Microbes and New Infections. 19:96-116. doi: 10.1016/j.nmni.2017.03.008.

  • Saucereau Y, et al. 2017. Comprehensive proteome profiling in Aedes albopictus to decipher Wolbachia-arbovirus interference phenomenon. BMC Genomics. 18:635. doi: 10.1186/s12864-017-3985-y.

  • Simonin M, et al. 2017. Toxicity of TiO2 nanoparticles on soil nitrification at environmentally relevant concentrations: Lack of classical dose–response relationships. Nanotoxicology. 1-9. doi: 10.1080/17435390.2017.1290845.

  • Vacheron J, et al. 2017. Differential contribution of plant-beneficial functions from Pseudomonas kilonensis F113 to root system architecture alterations in Arabidopsis thaliana and Zea mays. Molecular plant-microbe interactions: MPMI. doi: 10.1094/MPMI-07-17-0185-R.

  • Vacheron J, Dubost A, Chapulliot D, Prigent-Combaret C, Muller D. 2017. Draft Genome Sequence of Chryseobacterium sp. JV274 Isolated from Maize Rhizosphere. Genome Announcements. 5:e00122-17. doi: 10.1128/genomeA.00122-17.

  • Zotzmann S, et al. 2017. Bacterial diversity of cosmopolitan Culex pipiens and invasive Aedes japonicus from Germany. Parasitology Research. 116:1899-1906. doi: 10.1007/s00436-017-5466-2.
  • Florio A. 2017. Carbon and nitrogen limitation explain the contrasting responses of rhizospheric N-cycling microbial communities to maize inoculation by Azospirillum lipoferum CRT1.


Journal Article

  • Attard E, et al. 2016. Delayed and asymmetric responses of soil C pools and N fluxes to grassland/cropland conversions. Soil Biology and Biochemistry. 97:31-39. doi: 10.1016/j.soilbio.2016.02.016.

  • Barbi F, et al. 2016. Tree species select diverse soil fungal communities expressing different sets of lignocellulolytic enzyme-encoding genes. Soil Biology and Biochemistry. 100:149-159. doi: 10.1016/j.soilbio.2016.06.008.

  • Bardon C, et al. 2016. Mechanism of biological denitrification inhibition (BDI): procyanidins induce an allosteric transition of the membrane-bound NO3-reductase through membrane alteration. FEMS Microbiology Ecology. fiw034. doi: 10.1093/femsec/fiw034.

  • Baude J, et al. 2016. Coordinated Regulation of Species-Specific Hydroxycinnamic Acid Degradation and Siderophore Biosynthesis Pathways in Agrobacterium fabrum. Applied and Environmental Microbiology. 82:AEM.00419-16. doi: 10.1128/AEM.00419-16.

  • Bodilis J, et al. 2016. Draft Genome Sequences of Stenotrophomonas maltophilia Strains Sm32COP, Sm41DVV, Sm46PAILV, SmF3, SmF22, SmSOFb1, and SmCVFa1, Isolated from Different Manures in France. Genome Announcements. 4:e00841-16. doi: 10.1128/genomeA.00841-16.

  • Bonanno L, Petit M-A, Loukiadis E, Michel V, Auvray F. 2016. Heterogeneity in Induction Level, Infection Ability, and Morphology of Shiga Toxin-Encoding Phages (Stx Phages) from Dairy and Human Shiga Toxin-Producing Escherichia coli O26:H11 Isolates Dudley, EG. Applied and Environmental Microbiology. 82:2177-2186. doi: 10.1128/AEM.03463-15.

  • BORLAND S, PRIGENT-COMBARET C, WISNIEWSKI-DYE F. 2016. Bacterial hybrid histidine kinases in plant-bacteria interactions. Microbiology. doi: 10.1099/mic.0.000370.

  • Bouffaud M-L, Renoud S, Moënne-Loccoz Y, Muller D. 2016. Is plant evolutionary history impacting recruitment of diazotrophs and nifH expression in the rhizosphere? Scientific Reports. 6:21690. doi: 10.1038/srep21690.

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