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2019

Journal Article


  • Achouak, W., Abrouk, D., Guyonnet, J., Barakat, M., Ortet, P., Simon, L., et al. (2019). Plant hosts control microbial denitrification activity. Fems Microbiology Ecology, 95(3). doi:10.1093/femsec/fiz021


  • Alori, E. T., Babalola, O. O., & Prigent-Combaret, C. (2019). Impacts of Microbial Inoculants on the Growth and Yield of Maize Plant. The Open Agriculture Journal, 13(1). doi:10.2174/1874331501913010001


  • Bernard, C., Escalas, A., Villeriot, N., Agogué, H., Hugoni, M., Duval, C., et al. (2019). Very Low Phytoplankton Diversity in a Tropical Saline-Alkaline Lake, with Co-dominance of Arthrospira fusiformis (Cyanobacteria) and Picocystis salinarum (Chlorophyta). Microbial Ecology. doi:10.1007/s00248-019-01332-8


  • Béthencourt, L., Boubakri, H., Taib, N., Normand, P., Armengaud, J., Fournier, P., et al. (2019). Comparative genomics and proteogenomics highlight key molecular players involved in Frankia sporulation. Research In Microbiology. doi:10.1016/j.resmic.2019.04.002


  • Canouï, E., Ingen-Housz-Oro, S., Ortonne, N., Lebeaux, D., Rodriguez-Nava, V., Godeau, B., & Mahévas, M. (2019). Syndrome d’activation macrophagique associé à une granulomatose et une infiltration lymphocytaire T CD4 diffuse révélant une nocardiose disséminée et une infection pulmonaire à Streptomyces spp. La Revue De Médecine Interne. doi:10.1016/j.revmed.2019.04.013


  • Gasmi, M., Kitouni, M., Carro, L., Pujic, P., Normand, P., & Boubakri, H. (2019). Chitinolytic actinobacteria isolated from an Algerian semi-arid soil: development of an antifungal chitinase-dependent assay and GH18 chitinase gene identification. Annals Of Microbiology, 69(4), 395-405. doi:10.1007/s13213-018-1426-z


  • Gomard, Y., Lagadec, E., Humeau, L., Pinet, P., Bureau, S., Da Silva, D., et al. (2019). Feral cats do not play a major role in leptospirosis epidemiology on Reunion Island. Epidemiology And Infection, 147. doi:10.1017/S0950268819000190


  • Keshavarz-Tohid, V., Vacheron, J., Dubost, A., Prigent-Combaret, C., Taheri, P., Tarighi, S., et al. (2019). Genomic, phylogenetic and catabolic re-assessment of the Pseudomonas putida clade supports the delineation of Pseudomonas alloputida sp. nov., Pseudomonas inefficax sp. nov., Pseudomonas persica sp. nov., and Pseudomonas shirazica sp. nov. Systematic And Applied Microbiology. doi:10.1016/j.syapm.2019.04.004


  • Lebot, V., Michalet, S., & Legendre, L. (2019). Kavalactones and Flavokavins Profiles Contribute to Quality Assessment of Kava (Piper methysticum G. Forst.), the Traditional Beverage of the Pacific. Beverages, 5(2), 34. doi:10.3390/beverages5020034


  • Lepère, C., Domaizon, I., Humbert, J. - F., Jardillier, L., Hugoni, M., & Debroas, D. (2019). Diversity, spatial distribution and activity of fungi in freshwater ecosystems. Peerj, 7, e6247. doi:10.7717/peerj.6247


  • Lloyd, N. A., Nazaret, S., & Barkay, T. (2019). Genome-facilitated discovery of RND efflux pump-mediated resistance to cephalosporins in Vibrio spp. isolated from the mummichog fish gut. Journal Of Global Antimicrobial Resistance. doi:10.1016/j.jgar.2019.05.006


  • Luis, P., Vallon, L., Tran, F. H., Hugoni, M., Tran Van, V., Mavingui, P., et al. (2019). Aedes albopictus mosquitoes host a locally structured mycobiota with evidence of reduced fungal diversity in invasive populations. Fungal Ecology, 39, 257-266. doi:10.1016/j.funeco.2019.02.004


  • Luis, P., Saint‐Genis, G., Vallon, L., Bourgeois, C., Bruto, M., Marchand, C., et al. (2019). Contrasted ecological niches shape fungal and prokaryotic community structure in mangroves sediments. Environmental Microbiology, 21(4), 1407-1424. doi:10.1111/1462-2920.14571


  • Ma, B., Zhou, X., Zhang, Q., Qin, M., Hu, L., Yang, K., et al. (2019). How do soil micro-organisms respond to N, P and NP additions? Application of the ecological framework of (co-)limitation by multiple resources. Journal Of Ecology. doi:10.1111/1365-2745.13179


  • Maaloul, A., Michalet, S., Saadaoui, E., Ghzel, N., Bekir, J., Romdhane, C. B., et al. (2019). Effect of treated wastewater on growth and secondary metabolites production of two Eucalyptus species. Agricultural Water Management, 211, 1-9. doi:10.1016/j.agwat.2018.09.027


  • Pujic, P., Alloisio, N., Fournier, P., Roche, D., Sghaier, H., Miotello, G., et al. (2019). Omics of the early molecular dialogue between <i>Frankia alni</i> and <i>Alnus glutinosa</i> and the cellulase synton. Environmental Microbiology. doi:10.1111/1462-2920.14606


  • Rosa, E., Minard, G., Lindholm, J., & Saastamoinen, M. (2019). Moderate plant water stress improves larval development, and impacts immunity and gut microbiota of a specialist herbivore. Plos One, 14(2), e0204292. doi:10.1371/journal.pone.0204292


  • Theillet, G., Grard, G., Galla, M., Maisse, C., Enguehard, M., Cresson, M., et al. (2019). Detection of chikungunya virus-specific IgM on laser-cut paper-based device using pseudo-particles as capture antigen. Journal Of Medical Virology, 91(6), 899-910. doi:10.1002/jmv.25420


  • Valette, M., Rey, M., Gerin, F., Comte, G., & Wisniewski-Dyé, F. (2019). A common metabolomic signature is observed upon inoculation of rice roots with various rhizobacteria. Journal Of Integrative Plant Biology. doi:10.1111/jipb.12810

2018

Journal Article


  • Alonso, L., Creuzé-des-Châtelliers, C., Trabac, T., Dubost, A., Moënne-Loccoz, Y., & Pommier, T. (2018). Rock substrate rather than black stain alterations drives microbial community structure in the passage of Lascaux Cave. Microbiome, 6(1), 216. doi:10.1186/s40168-018-0599-9


  • Bardon, C., Misery, B., Piola, F., Poly, F., & Le Roux, X. (2018). Control of soil N cycle processes by <i>Pteridium aquilinum</i> and <i>Erica cinerea</i> in heathlands along a pH gradient. Ecosphere, 9(9), e02426. doi:10.1002/ecs2.2426


  • Bernardin-Souibgui, C., Barraud, S., Bourgeois, E., Aubin, J. - B., Becouze-Lareure, C., Wiest, L., et al. (2018). Incidence of hydrological, chemical, and physical constraints on bacterial pathogens, <Emphasis Type="Italic">Nocardia</Emphasis> cells, and fecal indicator bacteria trapped in an urban stormwater detention basin in Chassieu, France. Environmental Science And Pollution Research, 1-22. doi:10.1007/s11356-018-1994-2


  • Bertrand, C., Prigent-Combaret, C., & Gonzales-Coloma, A. (2018). Chemistry, activity, and impact of plant biocontrol products. Environmental Science And Pollution Research. doi:10.1007/s11356-018-3209-2


  • Besset-Manzoni, Y., Rieusset, L., Joly, P., Comte, G., & Prigent-Combaret, C. (2018). Exploiting rhizosphere microbial cooperation for developing sustainable agriculture strategies. Environmental Science And Pollution Research, 1-18. doi:10.1007/s11356-017-1152-2


  • Bodilis, J., Denet, E., Brothier, E., Graindorge, A., Favre-Bonté, S., & Nazaret, S. (2018). Comparative Genomics of Environmental and Clinical Burkholderia cenocepacia Strains Closely Related to the Highly Transmissible Epidemic ET12 Lineage. Frontiers In Microbiology, 9. doi:10.3389/fmicb.2018.00383


  • Bouffaud, M. - L., Renoud, S., Dubost, A., Moënne-Loccoz, Y., & Muller, D. (2018). 1-Aminocyclopropane-1-carboxylate deaminase producers associated to maize and other Poaceae species. Microbiome, 6(1). doi:10.1186/s40168-018-0503-7


  • Bounaffaa, M., Florio, A., Le Roux, X., & Jayet, P. - A. (2018). Economic and Environmental Analysis of Maize Inoculation by Plant Growth Promoting Rhizobacteria in the French Rhône-Alpes Region. Ecological Economics, 146, 334-346. doi:10.1016/j.ecolecon.2017.11.009


  • Capdeville, C., Pommier, T., Gervaix, J., Fromards, F., Rols, J. - L., & Leflaive, J. (2018). Mangrove facies drives resistance and resilience of sediment microbes exposed to anthropic disturbance. Frontiers In Microbiology, 9. doi:10.3389/fmicb.2018.03337


  • Chiapusio, G., Jassey, V. E. J., Bellvert, F., Comte, G., Weston, L. A., Delarue, F., et al. (2018). Sphagnum Species Modulate their Phenolic Profiles and Mycorrhizal Colonization of Surrounding Andromeda polifolia along Peatland Microhabitats. Journal Of Chemical Ecology. doi:10.1007/s10886-018-1023-4


  • Crème, A., Rumpel, C., Le Roux, X., Romian, A., Lan, T., & Chabbi, A. (2018). Ley grassland under temperate climate had a legacy effect on soil organic matter quantity, biogeochemical signature and microbial activities. Soil Biology And Biochemistry, 122, 203-210. doi:10.1016/j.soilbio.2018.04.018


  • Denet, E., Vasselon, V., Burdin, B., Nazaret, S., & Favre-Bonté, S. (2018). Survival and growth of Stenotrophomonas maltophilia in free-living amoebae (FLA) and bacterial virulence properties. Plos One, 13(2), e0192308. doi:10.1371/journal.pone.0192308


  • Destoumieux-Garzón, D., Mavingui, P., Boetch, G., Boissier, J., Darriet, F., Duboz, P., et al. (2018). The One Health concept: 10 years old and a long road ahead. Frontiers In Veterinary Science, 5. doi:10.3389/fvets.2018.00014


  • Douam, F., Fusil, F., Enguehard, M., Dib, L., Nadalin, F., Schwaller, L., et al. (2018). A protein coevolution method uncovers critical features of the Hepatitis C Virus fusion mechanism. (T. C. Pierson, Eds.)Plos Pathogens, 14(3), e1006908. doi:10.1371/journal.ppat.1006908

  • Doussan, C., Bérard, A., Czarnes, S., Legendre, L., Legouis, J., Ruy, S., & Guix, N. (2018). Do Plant Roots Modify The Soil Water Retention Properties of Rhizospheric Soil ? Evidences from the field and controlled conditions. Agu Fall Meeting Abstracts, 23. Retrieved from http://adsabs.harvard.edu/abs/2018AGUFM.B23K2684D


  • Gérard, E., De Goeyse, S., Hugoni, M., Agogue, H., Richard, L., Milesi, V., et al. (2018). Key role of Alphaproteobacteria and Cyanobacteria in the formation of stromatolites of Lake Dziani Dzaha (Mayotte, Western Indian Ocean). Frontiers In Microbiology, 9. doi:10.3389/fmicb.2018.00796


  • Ghedira, K., Harigua-Souiai, E., Hamda, C., Fournier, P., Pujic, P., Guesmi, S., et al. (2018). The PEG-responding desiccome of the alder microsymbiont Frankia alni. Scientific Reports, 8(1), 759. doi:10.1038/s41598-017-18839-0

  • Griesmann, M., Chang, Y., Liu, X., Song, Y., Haberer, G., Crook, M. B., et al. (2018). Phylogenomics reveals multiple losses of nitrogen-fixing root nodule symbiosis. Science (New York, N.y.). doi:10.1126/science.aat1743


  • Guégan, M., Minard, G., Tran, F. H., Tran Van, V., Dubost, A., & Valiente Moro, C. (2018). Short-term impacts of anthropogenic stressors on Aedes albopictus mosquito vector microbiota. Fems Microbiology Ecology. doi:10.1093/femsec/fiy188


  • Guégan, M., Zouache, K., Démichel, C., Minard, G., Tran Van, V., Potier, P., et al. (2018). The mosquito holobiont: fresh insight into mosquito-microbiota interactions. Microbiome, 6, 49. doi:10.1186/s40168-018-0435-2


  • Guyonnet, J. P., Guillemet, M., Dubost, A., Simon, L., Ortet, P., Barakat, M., et al. (2018). Plant Nutrient Resource Use Strategies Shape Active Rhizosphere Microbiota Through Root Exudation. Frontiers In Plant Science, 9. doi:10.3389/fpls.2018.01662


  • Guyonnet, J. P., Cantarel, A. A. M., Simon, L., & Haichar, F. Z. (2018). Root exudation rate as functional trait involved in plant nutrient-use strategy classification. Ecology And Evolution, 8(16), 8573-8581. doi:10.1002/ece3.4383


  • Hugoni, M., Escalas, A., Bernard, C., Nicolas, S., Jézéquel, D., Vazzoler, F., et al. (2018). Spatiotemporal variations in microbial diversity across the three domains of life in a tropical thalassohaline lake (Dziani Dzaha, Mayotte Island). Molecular Ecology. doi:10.1111/mec.14901


  • Hugoni, M., Luis, P., Guyonnet, J., & Haichar, F. Z. (2018). Plant host habitat and root exudates shape fungal diversity. Mycorrhiza. doi:10.1007/s00572-018-0857-5


  • Ibrahim, N. A. G. A. A., Omar, M. N. A. M., El Heba, G. A. A., Moënne-Loccoz, Y., Prigent-Combaret, C., & Muller, D. (2018). Draft Genome Sequence of Plant Growth-Promoting <i>Bacillus altitudinis</i> Strain PAE4. (J. C. Dunning Hotopp, Eds.)Microbiology Resource Announcements, 7(13). doi:10.1128/MRA.00962-18


  • Jacquemond, I., Muggeo, A., Lamblin, G., Tristan, A., Gillet, Y., Bolze, P. A., et al. (2018). Complex ecological interactions of Staphylococcus aureus in tampons during menstruation. Scientific Reports, 8(1), 9942. doi:10.1038/s41598-018-28116-3


  • Lavergne, C., Hugoni, M., Hubas, C., Debroas, D., Dupuy, C., & Agogué, H. (2018). Diel Rhythm Does Not Shape the Vertical Distribution of Bacterial and Archaeal 16S rRNA Transcript Diversity in Intertidal Sediments: a Mesocosm Study. Microbial Ecology, 75(2), 364-374. doi:10.1007/s00248-017-1048-1


  • Lavergne, C., Hugoni, M., Dupuy, C., & Agogué, H. (2018). First evidence of the presence and activity of archaeal C3 group members in an Atlantic intertidal mudflat. Scientific Reports, 8(1). doi:10.1038/s41598-018-30222-1


  • Le, H. T., Rochelle-Newall, E., Auda, Y., Ribolzi, O., Sengtaheuanghoung, O., Thébault, E., et al. (2018). Vicinal land use change strongly drives stream bacterial community in a tropical montane catchment. Fems Microbiology Ecology, 94(11). doi:10.1093/femsec/fiy155


  • Lebeaux, D., Bergeron, E., Berthet, J., Djadi-Prat, J., Mouniée, D., Boiron, P., et al. (2018). Antibiotic susceptibility testing and species identification of Nocardia isolates: a retrospective analysis of data from a French expert laboratory, 2010-2015. Clinical Microbiology And Infection. doi:10.1016/j.cmi.2018.06.013


  • Lecomte, S. M., Achouak, W., Abrouk, D., Heulin, T., Nesme, X., & Haichar, F. Z. (2018). Diversifying Anaerobic Respiration Strategies to Compete in the Rhizosphere. Frontiers In Environmental Science, 6. doi:10.3389/fenvs.2018.00139

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