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Journal Article

  • Almario J, et al. 2017. Distribution of 2,4-diacetylphloroglucinol biosynthetic genes among the Pseudomonas spp. reveals unexpected polyphyletism. Frontiers in Microbiology. 8. doi: 10.3389/fmicb.2017.01218.

  • Bardon C, et al. 2017. Biological denitrification inhibition (BDI) with procyanidins induces modification of root traits, growth and N status in Fallopia x bohemica. Soil Biology and Biochemistry. 107:41-49. doi: 10.1016/j.soilbio.2016.12.009.

  • Barot S, et al. 2017. Designing mixtures of varieties for multifunctional agriculture with the help of ecology. A review. Agronomy for Sustainable Development. 37:13. doi: 10.1007/s13593-017-0418-x.

  • Blondel C, et al. 2017. Assessing the dynamic changes of rhizosphere functionality of Zea mays plants grown in organochlorine contaminated soils. Journal of Hazardous Materials. 331:226-234. doi: 10.1016/j.jhazmat.2017.02.056.

  • Bouri M, et al. 2017. A simple and stable method of tagging Agrobacterium fabrum C58 for environmental monitoring. Phytopathologia Mediterranea. 56:1-9. doi: 10.14601/Phytopathol_Mediterr-18072.

  • Chapalain A, et al. 2017. Interplay between 4-hydroxy-3-methyl-2-alkylquinoline and N-acyl-homoserine lactone signaling in a Burkholderia cepacia complex clinical strain. Frontiers in Microbiology. 8. doi: 10.3389/fmicb.2017.01021.

  • Crampon M, et al. 2017. Low effect of phenanthrene bioaccessibility on its biodegradation in diffusely contaminated soil. Environmental Pollution. 225:663-673. doi: 10.1016/j.envpol.2017.03.053.

  • Doré J, et al. 2017. The ectomycorrhizal basidiomycete Hebeloma cylindrosporum undergoes early waves of transcriptional reprogramming prior to symbiotic structures differentiation. Environmental Microbiology. n/a-n/a. doi: 10.1111/1462-2920.13670.

  • El Moujahid L, et al. 2017. Effect of plant diversity on the diversity of soil organic compounds. PLOS ONE. 12:e0170494. doi: 10.1371/journal.pone.0170494.

  • Eymery M, et al. 2017. 164 Are viral respiratory infections a real issue in infants with cystic fibrosis: preliminary results of a prospective cohort study. Journal of Cystic Fibrosis. 16, Supplement 1:S108. doi: 10.1016/S1569-1993(17)30528-3.

  • Guyonnet JP, et al. 2017. The effects of plant nutritional strategy on soil microbial denitrification activity through rhizosphere primary metabolites. FEMS Microbiology Ecology. 93. doi: 10.1093/femsec/fix022.

  • Hay AE, et al. 2017. Control of Endophytic Frankia Sporulation by Alnus Nodule Metabolites. Molecular Plant-Microbe Interactions. 30:205-214. doi: 10.1094/MPMI-11-16-0235-R.

  • Hugoni M, Vellet A, Debroas D. 2017. Unique and highly variable bacterial communities inhabiting the surface microlayer of an oligotrophic lake. Aquatic Microbial Ecology. 79:115-125. doi: 10.3354/ame01825.

  • Le Quéré A, et al. 2017. Genomic characterization of Ensifer aridi, a proposed new species of nitrogen-fixing rhizobium recovered from Asian, African and American deserts. BMC Genomics. 18:85. doi: 10.1186/s12864-016-3447-y.

  • Lemanceau P, Blouin M, Muller D, Moënne-Loccoz Y. 2017. Let the Core Microbiota Be Functional. Trends in Plant Science. 22:583-595. doi: 10.1016/j.tplants.2017.04.008.

  • López-Lozano NE, et al. 2017. Denitrifying bacterial communities display different temporal fluctuation patterns across Dutch agricultural soils. Antonie van Leeuwenhoek. 1-13. doi: 10.1007/s10482-017-0898-3.

  • Michalet S, et al. 2017. Tolerance of Japanese knotweed s.l. to soil artificial polymetallic pollution: early metabolic responses and performance during vegetative multiplication. Environmental Science and Pollution Research. 1-11. doi: 10.1007/s11356-017-9716-8.

  • Minard G, et al. 2017. Identification of sympatric cryptic species of Aedes albopictus subgroup in Vietnam: new perspectives in phylosymbiosis of insect vector. Parasites & Vectors. 10:276. doi: 10.1186/s13071-017-2202-9.

  • Pages-Monteiro L, et al. 2017. Strong incidence of Pseudomonas aeruginosa on bacterial rrs and ITS genetic structures of cystic fibrosis sputa. PLOS ONE. 12:e0173022. doi: 10.1371/journal.pone.0173022.

  • Pham HN, et al. 2017. Impact of metal stress on the production of secondary metabolites in Pteris vittata L. and associated rhizosphere bacterial communities. Environmental Science and Pollution Research. 1-16. doi: 10.1007/s11356-017-9167-2.

  • Roy M, et al. 2017. Alder and the Golden Fleece: high diversity of Frankia and ectomycorrhizal fungi revealed from Alnus glutinosa subsp. barbata roots close to a Tertiary and glacial refugium. PeerJ. 5:e3479. doi: 10.7717/peerj.3479.

  • Salles JF, et al. 2017. Successional patterns of key genes and processes involved in the microbial nitrogen cycle in a salt marsh chronosequence. Biogeochemistry. 1-17. doi: 10.1007/s10533-017-0296-y.

  • Simonin M, et al. 2017. Toxicity of TiO2 nanoparticles on soil nitrification at environmentally relevant concentrations: Lack of classical dose–response relationships. Nanotoxicology. 1-9. doi: 10.1080/17435390.2017.1290845.

  • Vacheron J, Dubost A, Chapulliot D, Prigent-Combaret C, Muller D. 2017. Draft Genome Sequence of Chryseobacterium sp. JV274 Isolated from Maize Rhizosphere. Genome Announcements. 5:e00122-17. doi: 10.1128/genomeA.00122-17.


Journal Article

  • Attard E, et al. 2016. Delayed and asymmetric responses of soil C pools and N fluxes to grassland/cropland conversions. Soil Biology and Biochemistry. 97:31-39. doi: 10.1016/j.soilbio.2016.02.016.

  • Barbi F, et al. 2016. Tree species select diverse soil fungal communities expressing different sets of lignocellulolytic enzyme-encoding genes. Soil Biology and Biochemistry. 100:149-159. doi: 10.1016/j.soilbio.2016.06.008.

  • Bardon C, et al. 2016. Mechanism of biological denitrification inhibition (BDI): procyanidins induce an allosteric transition of the membrane-bound NO3-reductase through membrane alteration. FEMS Microbiology Ecology. fiw034. doi: 10.1093/femsec/fiw034.

  • Baude J, et al. 2016. Coordinated Regulation of Species-Specific Hydroxycinnamic Acid Degradation and Siderophore Biosynthesis Pathways in Agrobacterium fabrum. Applied and Environmental Microbiology. 82:AEM.00419-16. doi: 10.1128/AEM.00419-16.

  • Bodilis J, et al. 2016. Draft Genome Sequences of Stenotrophomonas maltophilia Strains Sm32COP, Sm41DVV, Sm46PAILV, SmF3, SmF22, SmSOFb1, and SmCVFa1, Isolated from Different Manures in France. Genome Announcements. 4:e00841-16. doi: 10.1128/genomeA.00841-16.

  • Bonanno L, Petit M-A, Loukiadis E, Michel V, Auvray F. 2016. Heterogeneity in Induction Level, Infection Ability, and Morphology of Shiga Toxin-Encoding Phages (Stx Phages) from Dairy and Human Shiga Toxin-Producing Escherichia coli O26:H11 Isolates Dudley, EG. Applied and Environmental Microbiology. 82:2177-2186. doi: 10.1128/AEM.03463-15.

  • BORLAND S, PRIGENT-COMBARET C, WISNIEWSKI-DYE F. 2016. Bacterial hybrid histidine kinases in plant-bacteria interactions. Microbiology. doi: 10.1099/mic.0.000370.

  • Bouffaud M-L, Renoud S, Moënne-Loccoz Y, Muller D. 2016. Is plant evolutionary history impacting recruitment of diazotrophs and nifH expression in the rhizosphere? Scientific Reports. 6:21690. doi: 10.1038/srep21690.

  • Boukerb AM, et al. 2016. Genomic Rearrangements and Functional Diversification of lecA and lecB Lectin-Coding Regions Impacting the Efficacy of Glycomimetics Directed against Pseudomonas aeruginosa. Antimicrobials, Resistance and Chemotherapy. 811. doi: 10.3389/fmicb.2016.00811.

  • Carro L, et al. 2016. Organic acids metabolism in Frankia alni. Symbiosis. 1-12. doi: 10.1007/s13199-016-0404-0.

  • Cavé L, et al. 2016. Efficiency and sensitivity of the digital droplet PCR for the quantification of antibiotic resistance genes in soils and organic residues. Applied Microbiology and Biotechnology. 1-12. doi: 10.1007/s00253-016-7950-5.

  • Cormier F, et al. 2016. Breeding for increased nitrogen-use efficiency: a review for wheat (T. aestivum L.). Plant Breeding. 135:255-278. doi: 10.1111/pbr.12371.

  • Coussement J, et al. 2016. Nocardia infection in solid organ transplant recipients: a multicenter European case-control study. Clinical Infectious Diseases. ciw241. doi: 10.1093/cid/ciw241.

  • Dangles O, et al. 2016. Research on Biodiversity and Climate Change at a Distance: Collaboration Networks between Europe and Latin America and the Caribbean. PLOS ONE. 11:e0157441. doi: 10.1371/journal.pone.0157441.

  • Debing Y, et al. 2016. Hepatitis E virus mutations associated with ribavirin treatment failure result in altered viral fitness and ribavirin sensitivity. Journal of Hepatology. doi: 10.1016/j.jhep.2016.05.002.

  • Deredjian A, et al. 2016. Occurrence of Stenotrophomonas maltophilia in agricultural soils and antibiotic resistance properties. Research in Microbiology. doi: 10.1016/j.resmic.2016.01.001.

  • Douëllou T, et al. 2016. Shiga toxin-producing Escherichia coli strains isolated from dairy products — Genetic diversity and virulence gene profiles. International Journal of Food Microbiology. 232:52-62. doi: 10.1016/j.ijfoodmicro.2016.04.032.

  • Florio A, Maienza A, Dell’Abate MT, Stazi SR, Benedetti A. 2016. Changes in the activity and abundance of the soil microbial community in response to the nitrification inhibitor 3,4-dimethylpyrazole phosphate (DMPP). Journal of Soils and Sediments. 1-11. doi: 10.1007/s11368-016-1471-9.

  • Franche C, Normand P, Pawlowski K, Tisa LS, Bogusz D. 2016. An update on research on Frankia. Symbiosis. 1-4. doi: 10.1007/s13199-016-0431-x.

  • Galia W, Jameh N, Perrin C, Genay M, Dary-Mourot A. 2016. Acquisition of PrtS in Streptococcus thermophilus is not enough in certain strains to achieve rapid milk acidification. Dairy Science & Technology. 1-14. doi: 10.1007/s13594-016-0292-3.

  • Gignoux J, Konaté S, Lahoreau G, Le Roux X, Simioni G. 2016. Allocation strategies of savanna and forest tree seedlings in response to fire and shading: outcomes of a field experiment. Scientific Reports. 6:38838. doi: 10.1038/srep38838.

  • Goubert C, et al. 2016. High-Throughput Sequencing of Transposable Elements Insertions Provides Evidence for Adaptive Evolution of the Invasive Asian Tiger Mosquito Towards Temperate Environments. bioRxiv. doi: 10.1101/049197.

  • Goubert C, Minard G, Vieira C, Boulesteix M. 2016. Population genetics of the Asian tiger mosquito Aedes albopictus, an invasive vector of human diseases. Heredity. doi: 10.1038/hdy.2016.35.

  • Haichar FZ, Heulin T, Guyonnet JP, Achouak W. 2016. Stable isotope probing of carbon flow in the plant holobiont. Current Opinion in Biotechnology. 41:9-13. doi: 10.1016/j.copbio.2016.02.023.

  • Jameh N, et al. 2016. Characterization of a new peptide transport system in Streptococcus thermophilus. Food Research International. 86:34-45. doi: 10.1016/j.foodres.2016.04.039.

  • Joffard N, Legendre L, Gibernau M, Pascal L. 2016. Differential accumulation of Volatile Organic Compounds (VOCs) by leaves and roots of two Guianese Philodendron species, P. fragrantissimum Kunth and P. melinonii Brongn. Chemistry & Biodiversity. n/a-n/a. doi: 10.1002/cbdv.201600415.

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