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Autres ...

2018

Article de revue


  • Besset-Manzoni, Y., Rieusset, L., Joly, P., Comte, G., Prigent-Combaret, C., 2018. Exploiting rhizosphere microbial cooperation for developing sustainable agriculture strategies. Environmental Science and Pollution Research 1-18. https://doi.org/10.1007/s11356-017-1152-2


  • Bodilis, J., Denet, E., Brothier, E., Graindorge, A., Favre-Bonté, S., Nazaret, S., 2018. Comparative Genomics of Environmental and Clinical Burkholderia cenocepacia Strains Closely Related to the Highly Transmissible Epidemic ET12 Lineage. Frontiers in Microbiology 9. https://doi.org/10.3389/fmicb.2018.00383


  • Bounaffaa, M., Florio, A., Le Roux, X., Jayet, P.-A., 2018. Economic and Environmental Analysis of Maize Inoculation by Plant Growth Promoting Rhizobacteria in the French Rhône-Alpes Region. Ecological Economics 146, 334-346. https://doi.org/10.1016/j.ecolecon.2017.11.009


  • Denet, E., Vasselon, V., Burdin, B., Nazaret, S., Favre-Bonté, S., 2018. Survival and growth of Stenotrophomonas maltophilia in free-living amoebae (FLA) and bacterial virulence properties. PLOS ONE 13, e0192308. https://doi.org/10.1371/journal.pone.0192308


  • Destoumieux-Garzón, D., Mavingui, P., Boetch, G., Boissier, J., Darriet, F., Duboz, P., Fritsch, C., Giraudoux, P., Le Roux, F., Morand, S., Paillard, C., Pontier, D., Sueur, C., Voituron, Y., 2018. The One Health concept: 10 years old and a long road ahead. Frontiers in Veterinary Science 5. https://doi.org/10.3389/fvets.2018.00014


  • Douam, F., Fusil, F., Enguehard, M., Dib, L., Nadalin, F., Schwaller, L., Hrebikova, G., Mancip, J., Mailly, L., Montserret, R., Ding, Q., Maisse, C., Carlot, E., Xu, K., Verhoeyen, E., Baumert, T.F., Ploss, A., Carbone, A., Cosset, F.-L., Lavillette, D., 2018. A protein coevolution method uncovers critical features of the Hepatitis C Virus fusion mechanism. PLOS Pathogens 14, e1006908. https://doi.org/10.1371/journal.ppat.1006908


  • Ghedira, K., Harigua-Souiai, E., Hamda, C., Fournier, P., Pujic, P., Guesmi, S., Guizani, I., Miotello, G., Armengaud, J., Normand, P., Sghaier, H., 2018. The PEG-responding desiccome of the alder microsymbiont Frankia alni. Scientific Reports 8, 759. https://doi.org/10.1038/s41598-017-18839-0


  • Lavergne, C., Hugoni, M., Hubas, C., Debroas, D., Dupuy, C., Agogué, H., 2018. Diel Rhythm Does Not Shape the Vertical Distribution of Bacterial and Archaeal 16S rRNA Transcript Diversity in Intertidal Sediments: a Mesocosm Study. Microbial Ecology 75, 364-374. https://doi.org/10.1007/s00248-017-1048-1


  • Leloup, J., Baude, M., Nunan, N., Meriguet, J., Dajoz, I., Le Roux, X., Raynaud, X., 2018. Unravelling the effects of plant species diversity and aboveground litter input on soil bacterial communities. Geoderma 317, 1-7. https://doi.org/10.1016/j.geoderma.2017.12.018

  • Lurthy, T., Alloisio, N., Fournier, P., Anchisi, S., Ponsero, A., Normand, P., Pujic, P., Boubakri, H., 2018. For publication Molecular response to nitrogen starvation by Frankia alni ACN14a revealed by transcriptomics and functional analysis with a fosmid library in Escherichia coli. Research in Microbiology. https://doi.org/10.1016/j.resmic.2017.12.002


  • Mallon, C.A., Roux, X., Doorn, G.S., Dini-Andreote, F., Poly, F., Salles, J.F., 2018. The impact of failure: unsuccessful bacterial invasions steer the soil microbial community away from the invader’s niche. The ISME Journal 1. https://doi.org/10.1038/s41396-017-0003-y

  • Meyer, T., Renoud, S., Vigouroux, A., Miomandre, A., Gaillard, V., Kerzaon, I., Prigent-Combaret, C., Comte, G., Moréra, S., Vial, L., Lavire, C., 2018. Regulation of hydroxycinnamic acid degradation drives Agrobacterium fabrum lifestyles. Molecular plant-microbe interactions: MPMI. https://doi.org/10.1094/MPMI-10-17-0236-R


  • Pommier, T., Cantarel, A.A.M., Grigulis, K., Lavorel, S., Legay, N., Baxendale, C., Bardgett, R.D., Bahn, M., Poly, F., Clément, J.-C., 2018. The added value of including key microbial traits to determine nitrogen-related ecosystem services in managed grasslands. Journal of Applied Ecology 55, 49-58. https://doi.org/10.1111/1365-2664.13010

  • Pozzi, A.C., Roy, M., Nagati, M., Schwob, G., Manzi, S., Gardes, M., Moreau, P.-A., Fernandez, M.P., 2018. Patterns of diversity, endemism and specialization in the root symbiont communities of alder species on the island of Corsica. The New Phytologist. https://doi.org/10.1111/nph.14996


  • Radix, S., Jordheim, A.D., Rocheblave, L., N'Digo, S., Prignon, A.-L., Commun, C., Michalet, S., Dijoux-Franca, M.-G., Mularoni, A., Walchshofer, N., 2018. N,N′ -disubstituted cinnamamide derivatives potentiate ciprofloxacin activity against overexpressing NorA efflux pump Staphylococcus aureus 1199B strains. European Journal of Medicinal Chemistry. https://doi.org/10.1016/j.ejmech.2018.03.028


  • Rouifed, S., Puijalon, S., Bardon, C., Meiffren, G., Buonomo, A., Sebei, N., Poussineau, S., Vallier, F., Shimoda, M., Piola, F., 2018. Comparison of defence and performance traits between one widespread clone and native populations in a major invasive plant species. Diversity and Distributions. https://doi.org/10.1111/ddi.12690


  • Srikanthasamy, T., Leloup, J., N'Dri, A.B., Barot, S., Gervaix, J., Koné, A.W., Koffi, K.F., Le Roux, X., Raynaud, X., Lata, J.-C., 2018. Contrasting effects of grasses and trees on microbial N-cycling in an African humid savanna. Soil Biology and Biochemistry 117, 153-163. https://doi.org/10.1016/j.soilbio.2017.11.016


  • Sutherland, W.J., Butchart, S.H.M., Connor, B., Culshaw, C., Dicks, L.V., Dinsdale, J., Doran, H., Entwistle, A.C., Fleishman, E., Gibbons, D.W., Jiang, Z., Keim, B., Roux, X.L., Lickorish, F.A., Markillie, P., Monk, K.A., Mortimer, D., Pearce-Higgins, J.W., Peck, L.S., Pretty, J., Seymour, C.L., Spalding, M.D., Tonneijck, F.H., Gleave, R.A., 2018. A 2018 Horizon Scan of Emerging Issues for Global Conservation and Biological Diversity. Trends in Ecology & Evolution 33, 47-58. https://doi.org/10.1016/j.tree.2017.11.006


  • Tetreau, G., Grizard, S., Patil, C.D., Tran, F.-H., Tran Van, V., Stalinski, R., Laporte, F., Mavingui, P., Després, L., Valiente Moro, C., 2018. Bacterial microbiota of Aedes aegypti mosquito larvae is altered by intoxication with Bacillus thuringiensis israelensis. Parasites & Vectors 11. https://doi.org/10.1186/s13071-018-2741-8

2017

Article de revue


  • Adamo, M., Voyron, S., Girlanda, M., Marmeisse, R., 2017. RNA extraction from decaying wood for (meta)transcriptomic analyses. Canadian Journal of Microbiology 63, 841-850. https://doi.org/10.1139/cjm-2017-0230


  • Almario, J., Bruto, M., Vacheron, J., Prigent-Combaret, C., Moënne-Loccoz, Y., Muller, D., 2017. Distribution of 2,4-diacetylphloroglucinol biosynthetic genes among the Pseudomonas spp. reveals unexpected polyphyletism. Frontiers in Microbiology 8, 1218. https://doi.org/10.3389/fmicb.2017.01218
  • Anne-Emmanuelle, H., Hasna, B., Antoine, B., Marjolaine, R., Guillaume, M., Laetitia, C.-G., Gilles, C., Aude, H.-B., 2017. Control of Endophytic Frankia Sporulation by Alnus Nodule Metabolites. Molecular Plant-Microbe Interactions 30, 205–214.


  • Assémien, F.L., Pommier, T., Gonnety, J.T., Gervaix, J., Le Roux, X., 2017. Adaptation of soil nitrifiers to very low nitrogen level jeopardizes the efficiency of chemical fertilization in west african moist savannas. Scientific Reports 7. https://doi.org/10.1038/s41598-017-10185-5


  • Bardon, C., Poly, F., Haichar, F.Z., Le Roux, X., Simon, L., Meiffren, G., Comte, G., Rouifed, S., Piola, F., 2017. Biological denitrification inhibition (BDI) with procyanidins induces modification of root traits, growth and N status in Fallopia x bohemica. Soil Biology and Biochemistry 107, 41-49. https://doi.org/10.1016/j.soilbio.2016.12.009


  • Barot, S., Allard, V., Cantarel, A., Enjalbert, J., Gauffreteau, A., Goldringer, I., Lata, J.-C., Le Roux, X., Niboyet, A., Porcher, E., 2017. Designing mixtures of varieties for multifunctional agriculture with the help of ecology. A review. Agronomy for Sustainable Development 37, 13. https://doi.org/10.1007/s13593-017-0418-x


  • Bernardin Souibgui, C., Zoropogui, A., Voisin, J., Ribun, S., Vasselon, V., Pujic, P., Rodriguez-Nava, V., Belly, P., Cournoyer, B., Blaha, D., 2017. Virulence test using nematodes to prescreen <i>Nocardia</i> species capable of inducing neurodegeneration and behavioral disorders. PeerJ 5, e3823. https://doi.org/10.7717/peerj.3823


  • Bertin, Y., Habouzit, C., Dunière, L., Laurier, M., Durand, A., Duchez, D., Segura, A., Thévenot-Sergentet, D., Baruzzi, F., Chaucheyras-Durand, F., Forano, E., 2017. Lactobacillus reuteri suppresses E. coli O157:H7 in bovine ruminal fluid: Toward a pre-slaughter strategy to improve food safety? PLOS ONE 12, e0187229. https://doi.org/10.1371/journal.pone.0187229


  • Blondel, C., Briset, L., Legay, N., Arnoldi, C., Poly, F., Clément, J.-C., Raveton, M., 2017. Assessing the dynamic changes of rhizosphere functionality of Zea mays plants grown in organochlorine contaminated soils. Journal of Hazardous Materials 331, 226-234. https://doi.org/10.1016/j.jhazmat.2017.02.056


  • Bouri, M., Gharsa, H.B., Vial, L., Lavire, C., Glick, B.R., Rhouma, A., 2017. A simple and stable method of tagging Agrobacterium fabrum C58 for environmental monitoring. Phytopathologia Mediterranea 56, 1-9. https://doi.org/10.14601/Phytopathol_Mediterr-18072


  • Canouï, E., Blanc, K., Loubinoux, J., Valade, S., Hamard, C., Lefebvre, A., Amorim, S., Bébéar, C., Rodriguez-Nava, V., Lebeaux, D., Launay, O., Alifano, M., Rabbat, A., Kernéis, S., 2017. The value of molecular techniques to diagnose Ureaplasma urealyticum and Nocardia farcinica pleuropneumonia in a patient with diffuse large B-cell lymphoma. International Journal of Infectious Diseases 64, 93-95. https://doi.org/10.1016/j.ijid.2017.09.015


  • Chapalain, A., Groleau, M.-C., Le Guillouzer, S., Miomandre, A., Vial, L., Milot, S., Déziel, E., 2017. Interplay between 4-hydroxy-3-methyl-2-alkylquinoline and N-acyl-homoserine lactone signaling in a Burkholderia cepacia complex clinical strain. Frontiers in Microbiology 8. https://doi.org/10.3389/fmicb.2017.01021


  • Chonova, T., Labanowski, J., Cournoyer, B., Chardon, C., Keck, F., Laurent, É., Mondamert, L., Vasselon, V., Wiest, L., Bouchez, A., 2017. River biofilm community changes related to pharmaceutical loads emitted by a wastewater treatment plant. Environmental Science and Pollution Research 1-11. https://doi.org/10.1007/s11356-017-0024-0


  • Chonova, T., Lecomte, V., Bertrand-Krajewski, J.-L., Bouchez, A., Labanowski, J., Dagot, C., Lévi, Y., Perrodin, Y., Wiest, L., Gonzalez-Ospina, A., Cournoyer, B., Sebastian, C., 2017. The SIPIBEL project: treatment of hospital and urban wastewater in a conventional urban wastewater treatment plant. Environmental Science and Pollution Research 1-10. https://doi.org/10.1007/s11356-017-9302-0


  • Crampon, M., Cébron, A., Portet-Koltalo, F., Uroz, S., Le Derf, F., Bodilis, J., 2017. Low effect of phenanthrene bioaccessibility on its biodegradation in diffusely contaminated soil. Environmental Pollution 225, 663-673. https://doi.org/10.1016/j.envpol.2017.03.053


  • Denet, E., Coupat-Goutaland, B., Nazaret, S., Pélandakis, M., Favre-Bonté, S., 2017. Diversity of free-living amoebae in soils and their associated human opportunistic bacteria. Parasitology Research. https://doi.org/10.1007/s00436-017-5632-6


  • Dickson, L.B., Jiolle, D., Minard, G., Moltini-Conclois, I., Volant, S., Ghozlane, A., Bouchier, C., Ayala, D., Paupy, C., Moro, C.V., Lambrechts, L., 2017. Carryover effects of larval exposure to different environmental bacteria drive adult trait variation in a mosquito vector. Science Advances 3, e1700585. https://doi.org/10.1126/sciadv.1700585


  • Doré, J., Kohler, A., Dubost, A., Lindquist, E., Kuo, A., Grigoriev, I.V., Martin, F., Marmeisse, R., Gay, G., 2017. The ectomycorrhizal basidiomycete Hebeloma cylindrosporum undergoes early waves of transcriptional reprogramming prior to symbiotic structures differentiation. Environmental Microbiology 19, 1338–1354. https://doi.org/10.1111/1462-2920.13670


  • Douëllou, T., Delannoy, S., Ganet, S., Fach, P., Loukiadis, E., Montel, M.-C., Sergentet-Thevenot, D., 2017. Molecular characterization of O157:H7, O26:H11 and O103:H2 Shiga toxin-producing Escherichia coli isolated from dairy products. International Journal of Food Microbiology 253, 59-65. https://doi.org/10.1016/j.ijfoodmicro.2017.04.010


  • El Moujahid, L., Le Roux, X., Michalet, S., Bellvert, F., Weigelt, A., Poly, F., 2017. Effect of plant diversity on the diversity of soil organic compounds. PLOS ONE 12, e0170494. https://doi.org/10.1371/journal.pone.0170494


  • Eymery, M., Reix, P., Morfin, F., Doleans-Jordheim, A., Vrielynck, S., Jubin, V., Perceval, M., 2017. 164 Are viral respiratory infections a real issue in infants with cystic fibrosis: preliminary results of a prospective cohort study. Journal of Cystic Fibrosis, Abstracts of the 40th European Cystic Fibrosis Conference 16, Supplement 1, S108. https://doi.org/10.1016/S1569-1993(17)30528-3


  • Florio, A., Pommier, T., Gervaix, J., Bérard, A., Le Roux, X., 2017. Soil C and N statuses determine the effect of maize inoculation by plant growth-promoting rhizobacteria on nitrifying and denitrifying communities. Scientific Reports 7. https://doi.org/10.1038/s41598-017-08589-4


  • Galia, W., Leriche, F., Cruveiller, S., Garnier, C., Navratil, V., Dubost, A., Blanquet-Diot, S., Thevenot-Sergentet, D., 2017. Strand-specific transcriptomes of Enterohemorrhagic Escherichia coli in response to interactions with ground beef microbiota: interactions between microorganisms in raw meat. BMC Genomics 18, 574. https://doi.org/10.1186/s12864-017-3957-2


  • Goubert, C., Henri, H., Minard, G., Valiente Moro, C., Mavingui, P., Vieira, C., Boulesteix, M., 2017. High-throughput sequencing of transposable element insertions suggests adaptive evolution of the invasive Asian tiger mosquito towards temperate environments. Molecular Ecology 26, 3968-3981. https://doi.org/10.1111/mec.14184


  • Guyonnet, J.P., Vautrin, F., Meiffren, G., Labois, C., Cantarel, A.A.M., Michalet, S., Comte, G., Haichar, F.Z., 2017. The effects of plant nutritional strategy on soil microbial denitrification activity through rhizosphere primary metabolites. FEMS Microbiology Ecology 93. https://doi.org/10.1093/femsec/fix022


  • Habbadi, K., Meyer, T., Vial, L., Gaillard, V., Benkirane, R., Benbouazza, A., Kerzaon, I., Achbani, E.H., Lavire, C., 2017. Essential oils of Origanum compactum and Thymus vulgaris exert a protective effect against the phytopathogen Allorhizobium vitis. Environmental Science and Pollution Research International 1-10. https://doi.org/10.1007/s11356-017-1008-9


  • Hay, A.E., Boubakri, H., Buonomo, A., Rey, M., Meiffren, G., Cotin-Galvan, L., Comte, G., Herrera-Belaroussi, A., 2017. Control of Endophytic Frankia Sporulation by Alnus Nodule Metabolites. Molecular Plant-Microbe Interactions 30, 205-214. https://doi.org/10.1094/MPMI-11-16-0235-R


  • Hugoni, M., Vellet, A., Debroas, D., 2017. Unique and highly variable bacterial communities inhabiting the surface microlayer of an oligotrophic lake. Aquatic Microbial Ecology 79, 115-125. https://doi.org/10.3354/ame01825


  • Joffard, N., Legendre, L., Gibernau, M., Pascal, L., 2017. Differential Accumulation of Volatile Organic Compounds by Leaves and Roots of Two Guianese Philodendron Species, P. fragrantissimum Kunth and P. melinonii Brongn. Chemistry & Biodiversity 14, e1600415. https://doi.org/10.1002/cbdv.201600415


  • Jurburg, S.D., Nunes, I., Stegen, J.C., Le Roux, X., Priemé, A., Sørensen, S.J., Salles, J.F., 2017. Autogenic succession and deterministic recovery following disturbance in soil bacterial communities. Scientific Reports 7. https://doi.org/10.1038/srep45691
  • Kasrati, A., Alaoui Jamali, C., Spooner-Hart, R., Legendre, L., Leach, D., Abbad, A., 2017. Chemical Characterization and Biological Activities of Essential Oil Obtained from Mint Timija Cultivated under Mineral and Biological Fertilizers. Journal of analytical methods in chemistry 2017.

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