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Autres ...

2018

Article de revue


  • Bernardin-Souibgui, C., Barraud, S., Bourgeois, E., Aubin, J.-B., Becouze-Lareure, C., Wiest, L., Marjolet, L., Colinon, C., Kouyi, G.L., Cournoyer, B., Blaha, D., 2018. Incidence of hydrological, chemical, and physical constraints on bacterial pathogens, <Emphasis Type="Italic">Nocardia</Emphasis> cells, and fecal indicator bacteria trapped in an urban stormwater detention basin in Chassieu, France. Environmental Science and Pollution Research 1-22. https://doi.org/10.1007/s11356-018-1994-2


  • Besset-Manzoni, Y., Rieusset, L., Joly, P., Comte, G., Prigent-Combaret, C., 2018. Exploiting rhizosphere microbial cooperation for developing sustainable agriculture strategies. Environmental Science and Pollution Research 1-18. https://doi.org/10.1007/s11356-017-1152-2


  • Bodilis, J., Denet, E., Brothier, E., Graindorge, A., Favre-Bonté, S., Nazaret, S., 2018. Comparative Genomics of Environmental and Clinical Burkholderia cenocepacia Strains Closely Related to the Highly Transmissible Epidemic ET12 Lineage. Frontiers in Microbiology 9. https://doi.org/10.3389/fmicb.2018.00383


  • Bouffaud, M.-L., Renoud, S., Dubost, A., Moënne-Loccoz, Y., Muller, D., 2018. 1-Aminocyclopropane-1-carboxylate deaminase producers associated to maize and other Poaceae species. Microbiome 6. https://doi.org/10.1186/s40168-018-0503-7


  • Bounaffaa, M., Florio, A., Le Roux, X., Jayet, P.-A., 2018. Economic and Environmental Analysis of Maize Inoculation by Plant Growth Promoting Rhizobacteria in the French Rhône-Alpes Region. Ecological Economics 146, 334-346. https://doi.org/10.1016/j.ecolecon.2017.11.009


  • Crème, A., Rumpel, C., Le Roux, X., Romian, A., Lan, T., Chabbi, A., 2018. Ley grassland under temperate climate had a legacy effect on soil organic matter quantity, biogeochemical signature and microbial activities. Soil Biology and Biochemistry 122, 203-210. https://doi.org/10.1016/j.soilbio.2018.04.018


  • Denet, E., Vasselon, V., Burdin, B., Nazaret, S., Favre-Bonté, S., 2018. Survival and growth of Stenotrophomonas maltophilia in free-living amoebae (FLA) and bacterial virulence properties. PLOS ONE 13, e0192308. https://doi.org/10.1371/journal.pone.0192308


  • Destoumieux-Garzón, D., Mavingui, P., Boetch, G., Boissier, J., Darriet, F., Duboz, P., Fritsch, C., Giraudoux, P., Le Roux, F., Morand, S., Paillard, C., Pontier, D., Sueur, C., Voituron, Y., 2018. The One Health concept: 10 years old and a long road ahead. Frontiers in Veterinary Science 5. https://doi.org/10.3389/fvets.2018.00014


  • Douam, F., Fusil, F., Enguehard, M., Dib, L., Nadalin, F., Schwaller, L., Hrebikova, G., Mancip, J., Mailly, L., Montserret, R., Ding, Q., Maisse, C., Carlot, E., Xu, K., Verhoeyen, E., Baumert, T.F., Ploss, A., Carbone, A., Cosset, F.-L., Lavillette, D., 2018. A protein coevolution method uncovers critical features of the Hepatitis C Virus fusion mechanism. PLOS Pathogens 14, e1006908. https://doi.org/10.1371/journal.ppat.1006908


  • Gérard, E., De Goeyse, S., Hugoni, M., Agogue, H., Richard, L., Milesi, V., Guyot, F., Lecourt, L., Borensztajn, S., Leclerc, T., Joseph, M.-B., Sarazin, G., Jezequel, D., Leboulanger, C., Ader, M., 2018. Key role of Alphaproteobacteria and Cyanobacteria in the formation of stromatolites of Lake Dziani Dzaha (Mayotte, Western Indian Ocean). Frontiers in Microbiology 9. https://doi.org/10.3389/fmicb.2018.00796


  • Ghedira, K., Harigua-Souiai, E., Hamda, C., Fournier, P., Pujic, P., Guesmi, S., Guizani, I., Miotello, G., Armengaud, J., Normand, P., Sghaier, H., 2018. The PEG-responding desiccome of the alder microsymbiont Frankia alni. Scientific Reports 8, 759. https://doi.org/10.1038/s41598-017-18839-0

  • Griesmann, M., Chang, Y., Liu, X., Song, Y., Haberer, G., Crook, M.B., Billault-Penneteau, B., Lauressergues, D., Keller, J., Imanishi, L., Roswanjaya, Y.P., Kohlen, W., Pujic, P., Battenberg, K., Alloisio, N., Liang, Y., Hilhorst, H., Salgado, M.G., Hocher, V., Gherbi, H., Svistoonoff, S., Doyle, J.J., He, S., Xu, Y., Xu, S., Qu, J., Gao, Q., Fang, X., Fu, Y., Normand, P., Berry, A.M., Wall, L.G., Ané, J.-M., Pawlowski, K., Xu, X., Yang, H., Spannagl, M., Mayer, K.F.X., Wong, G.K.-S., Parniske, M., Delaux, P.-M., Cheng, S., 2018. Phylogenomics reveals multiple losses of nitrogen-fixing root nodule symbiosis. Science (New York, N.Y.). https://doi.org/10.1126/science.aat1743


  • Guégan, M., Zouache, K., Démichel, C., Minard, G., Tran Van, V., Potier, P., Mavingui, P., Valiente Moro, C., 2018. The mosquito holobiont: fresh insight into mosquito-microbiota interactions. Microbiome 6, 49. https://doi.org/10.1186/s40168-018-0435-2


  • Jacquemond, I., Muggeo, A., Lamblin, G., Tristan, A., Gillet, Y., Bolze, P.A., Bes, M., Gustave, C.A., Rasigade, J.-P., Golfier, F., Ferry, T., Dubost, A., Abrouk, D., Barreto, S., Prigent-Combaret, C., Thioulouse, J., Lina, G., Muller, D., 2018. Complex ecological interactions of Staphylococcus aureus in tampons during menstruation. Scientific Reports 8, 9942. https://doi.org/10.1038/s41598-018-28116-3


  • Lavergne, C., Hugoni, M., Hubas, C., Debroas, D., Dupuy, C., Agogué, H., 2018. Diel Rhythm Does Not Shape the Vertical Distribution of Bacterial and Archaeal 16S rRNA Transcript Diversity in Intertidal Sediments: a Mesocosm Study. Microbial Ecology 75, 364-374. https://doi.org/10.1007/s00248-017-1048-1


  • Lebeaux, D., Bergeron, E., Berthet, J., Djadi-Prat, J., Mouniée, D., Boiron, P., Lortholary, O., Rodriguez-Nava, V., 2018. Antibiotic susceptibility testing and species identification of Nocardia isolates: a retrospective analysis of data from a French expert laboratory, 2010-2015. Clinical Microbiology and Infection. https://doi.org/10.1016/j.cmi.2018.06.013


  • Leloup, J., Baude, M., Nunan, N., Meriguet, J., Dajoz, I., Le Roux, X., Raynaud, X., 2018. Unravelling the effects of plant species diversity and aboveground litter input on soil bacterial communities. Geoderma 317, 1-7. https://doi.org/10.1016/j.geoderma.2017.12.018


  • Lloyd, N.A., Nazaret, S., Barkay, T., 2018. Whole genome sequences to assess the link between antibiotic and metal resistance in three coastal marine bacteria isolated from the mummichog gastrointestinal tract. Marine Pollution Bulletin 135, 514-520. https://doi.org/10.1016/j.marpolbul.2018.07.051

  • Lurthy, T., Alloisio, N., Fournier, P., Anchisi, S., Ponsero, A., Normand, P., Pujic, P., Boubakri, H., 2018. For publication Molecular response to nitrogen starvation by Frankia alni ACN14a revealed by transcriptomics and functional analysis with a fosmid library in Escherichia coli. Research in Microbiology. https://doi.org/10.1016/j.resmic.2017.12.002


  • Mallon, C.A., Roux, X., Doorn, G.S., Dini-Andreote, F., Poly, F., Salles, J.F., 2018. The impact of failure: unsuccessful bacterial invasions steer the soil microbial community away from the invader’s niche. The ISME Journal 1. https://doi.org/10.1038/s41396-017-0003-y

  • Meyer, T., Renoud, S., Vigouroux, A., Miomandre, A., Gaillard, V., Kerzaon, I., Prigent-Combaret, C., Comte, G., Moréra, S., Vial, L., Lavire, C., 2018. Regulation of hydroxycinnamic acid degradation drives Agrobacterium fabrum lifestyles. Molecular plant-microbe interactions: MPMI. https://doi.org/10.1094/MPMI-10-17-0236-R


  • Nonfoux, L., Chiaruzzi, M., Badiou, C., Baude, J., Tristan, A., Thioulouse, J., Muller, D., Prigent-Combaret, C., Lina, G., 2018. Impact of Currently Marketed Tampons and Menstrual Cups on Staphylococcus aureus Growth and Toxic Shock Syndrome Toxin 1 Production In Vitro. Applied and Environmental Microbiology 84, e00351-18. https://doi.org/10.1128/AEM.00351-18


  • Pommier, T., Cantarel, A.A.M., Grigulis, K., Lavorel, S., Legay, N., Baxendale, C., Bardgett, R.D., Bahn, M., Poly, F., Clément, J.-C., 2018. The added value of including key microbial traits to determine nitrogen-related ecosystem services in managed grasslands. Journal of Applied Ecology 55, 49-58. https://doi.org/10.1111/1365-2664.13010


  • Pozzi, A.C., Bautista-Guerrero, H.H., Abby, S.S., Herrera-Belaroussi, A., Abrouk, D., Normand, P., Menu, F., Fernandez, M.P., 2018. Robust Frankia phylogeny, species delineation and intraspecies diversity based on Multi-Locus Sequence Analysis (MLSA) and Single-Locus Strain Typing (SLST) adapted to a large sample size. Systematic and Applied Microbiology. https://doi.org/10.1016/j.syapm.2018.03.002

  • Pozzi, A.C., Roy, M., Nagati, M., Schwob, G., Manzi, S., Gardes, M., Moreau, P.-A., Fernandez, M.P., 2018. Patterns of diversity, endemism and specialization in the root symbiont communities of alder species on the island of Corsica. The New Phytologist. https://doi.org/10.1111/nph.14996


  • Radix, S., Jordheim, A.D., Rocheblave, L., N'Digo, S., Prignon, A.-L., Commun, C., Michalet, S., Dijoux-Franca, M.-G., Mularoni, A., Walchshofer, N., 2018. N,N′ -disubstituted cinnamamide derivatives potentiate ciprofloxacin activity against overexpressing NorA efflux pump Staphylococcus aureus 1199B strains. European Journal of Medicinal Chemistry. https://doi.org/10.1016/j.ejmech.2018.03.028


  • Riesco, R., Carro, L., Román-Ponce, B., Prieto, C., Blom, J., Klenk, H.-P., Normand, P., Trujillo, M.E., 2018. Defining the species Micromonospora saelicesensis and Micromonospora noduli under the framework of genomics. Frontiers in Microbiology 9. https://doi.org/10.3389/fmicb.2018.01360


  • Rouifed, S., Puijalon, S., Bardon, C., Meiffren, G., Buonomo, A., Sebei, N., Poussineau, S., Vallier, F., Shimoda, M., Piola, F., 2018. Comparison of defence and performance traits between one widespread clone and native populations in a major invasive plant species. Diversity and Distributions. https://doi.org/10.1111/ddi.12690


  • Srikanthasamy, T., Leloup, J., N'Dri, A.B., Barot, S., Gervaix, J., Koné, A.W., Koffi, K.F., Le Roux, X., Raynaud, X., Lata, J.-C., 2018. Contrasting effects of grasses and trees on microbial N-cycling in an African humid savanna. Soil Biology and Biochemistry 117, 153-163. https://doi.org/10.1016/j.soilbio.2017.11.016


  • Sutherland, W.J., Butchart, S.H.M., Connor, B., Culshaw, C., Dicks, L.V., Dinsdale, J., Doran, H., Entwistle, A.C., Fleishman, E., Gibbons, D.W., Jiang, Z., Keim, B., Roux, X.L., Lickorish, F.A., Markillie, P., Monk, K.A., Mortimer, D., Pearce-Higgins, J.W., Peck, L.S., Pretty, J., Seymour, C.L., Spalding, M.D., Tonneijck, F.H., Gleave, R.A., 2018. A 2018 Horizon Scan of Emerging Issues for Global Conservation and Biological Diversity. Trends in Ecology & Evolution 33, 47-58. https://doi.org/10.1016/j.tree.2017.11.006


  • Tetreau, G., Grizard, S., Patil, C.D., Tran, F.-H., Tran Van, V., Stalinski, R., Laporte, F., Mavingui, P., Després, L., Valiente Moro, C., 2018. Bacterial microbiota of Aedes aegypti mosquito larvae is altered by intoxication with Bacillus thuringiensis israelensis. Parasites & Vectors 11. https://doi.org/10.1186/s13071-018-2741-8


  • Voisin, J., Cournoyer, B., Vienney, A., Mermillod-Blondin, F., 2018. Aquifer recharge with stormwater runoff in urban areas: Influence of vadose zone thickness on nutrient and bacterial transfers from the surface of infiltration basins to groundwater. Science of The Total Environment 637-638, 1496-1507. https://doi.org/10.1016/j.scitotenv.2018.05.094
Chapitre de livre

  • Mavingui, P., Valiente Moro, C., Tortosa, P., 2018. Exploiting symbiotic interactions for vector/disease control, dans: Ecology And Evolution Of Infectious Diseases: Pathogen Control And Public Health Management In Low-Income Countries. Oxford University Press, p. 163-179.
Page Web

  • Kosova-Maali, D., Bergeron, E., Maali, Y., Durand, T., Gonzalez, J., Mouniée, D., Sandoval Trujillo, H., Boiron, P., Salinas-Carmona, M.-C., Rodriguez-Nava, V., 2018. High Intraspecific Genetic Diversity of Nocardia brasiliensis, a Pathogen Responsible for Cutaneous Nocardiosis Found in France: Phylogenetic Relationships by Using sod and hsp65 Genes [WWW Document]. BioMed Research International. URL https://www.hindawi.com/journals/bmri/2018/7314054/ (consulté 6.6.2018).

2017

Article de revue


  • Adamo, M., Voyron, S., Girlanda, M., Marmeisse, R., 2017. RNA extraction from decaying wood for (meta)transcriptomic analyses. Canadian Journal of Microbiology 63, 841-850. https://doi.org/10.1139/cjm-2017-0230


  • Almario, J., Bruto, M., Vacheron, J., Prigent-Combaret, C., Moënne-Loccoz, Y., Muller, D., 2017. Distribution of 2,4-diacetylphloroglucinol biosynthetic genes among the Pseudomonas spp. reveals unexpected polyphyletism. Frontiers in Microbiology 8, 1218. https://doi.org/10.3389/fmicb.2017.01218
  • Anne-Emmanuelle, H., Hasna, B., Antoine, B., Marjolaine, R., Guillaume, M., Laetitia, C.-G., Gilles, C., Aude, H.-B., 2017. Control of Endophytic Frankia Sporulation by Alnus Nodule Metabolites. Molecular Plant-Microbe Interactions 30, 205–214.


  • Assémien, F.L., Pommier, T., Gonnety, J.T., Gervaix, J., Le Roux, X., 2017. Adaptation of soil nitrifiers to very low nitrogen level jeopardizes the efficiency of chemical fertilization in west african moist savannas. Scientific Reports 7. https://doi.org/10.1038/s41598-017-10185-5


  • Bardon, C., Poly, F., Haichar, F.Z., Le Roux, X., Simon, L., Meiffren, G., Comte, G., Rouifed, S., Piola, F., 2017. Biological denitrification inhibition (BDI) with procyanidins induces modification of root traits, growth and N status in Fallopia x bohemica. Soil Biology and Biochemistry 107, 41-49. https://doi.org/10.1016/j.soilbio.2016.12.009


  • Barot, S., Allard, V., Cantarel, A., Enjalbert, J., Gauffreteau, A., Goldringer, I., Lata, J.-C., Le Roux, X., Niboyet, A., Porcher, E., 2017. Designing mixtures of varieties for multifunctional agriculture with the help of ecology. A review. Agronomy for Sustainable Development 37, 13. https://doi.org/10.1007/s13593-017-0418-x


  • Bernardin Souibgui, C., Zoropogui, A., Voisin, J., Ribun, S., Vasselon, V., Pujic, P., Rodriguez-Nava, V., Belly, P., Cournoyer, B., Blaha, D., 2017. Virulence test using nematodes to prescreen <i>Nocardia</i> species capable of inducing neurodegeneration and behavioral disorders. PeerJ 5, e3823. https://doi.org/10.7717/peerj.3823


  • Bertin, Y., Habouzit, C., Dunière, L., Laurier, M., Durand, A., Duchez, D., Segura, A., Thévenot-Sergentet, D., Baruzzi, F., Chaucheyras-Durand, F., Forano, E., 2017. Lactobacillus reuteri suppresses E. coli O157:H7 in bovine ruminal fluid: Toward a pre-slaughter strategy to improve food safety? PLOS ONE 12, e0187229. https://doi.org/10.1371/journal.pone.0187229


  • Blondel, C., Briset, L., Legay, N., Arnoldi, C., Poly, F., Clément, J.-C., Raveton, M., 2017. Assessing the dynamic changes of rhizosphere functionality of Zea mays plants grown in organochlorine contaminated soils. Journal of Hazardous Materials 331, 226-234. https://doi.org/10.1016/j.jhazmat.2017.02.056


  • Bouri, M., Gharsa, H.B., Vial, L., Lavire, C., Glick, B.R., Rhouma, A., 2017. A simple and stable method of tagging Agrobacterium fabrum C58 for environmental monitoring. Phytopathologia Mediterranea 56, 1-9. https://doi.org/10.14601/Phytopathol_Mediterr-18072


  • Canouï, E., Blanc, K., Loubinoux, J., Valade, S., Hamard, C., Lefebvre, A., Amorim, S., Bébéar, C., Rodriguez-Nava, V., Lebeaux, D., Launay, O., Alifano, M., Rabbat, A., Kernéis, S., 2017. The value of molecular techniques to diagnose Ureaplasma urealyticum and Nocardia farcinica pleuropneumonia in a patient with diffuse large B-cell lymphoma. International Journal of Infectious Diseases 64, 93-95. https://doi.org/10.1016/j.ijid.2017.09.015


  • Chapalain, A., Groleau, M.-C., Le Guillouzer, S., Miomandre, A., Vial, L., Milot, S., Déziel, E., 2017. Interplay between 4-hydroxy-3-methyl-2-alkylquinoline and N-acyl-homoserine lactone signaling in a Burkholderia cepacia complex clinical strain. Frontiers in Microbiology 8. https://doi.org/10.3389/fmicb.2017.01021


  • Chonova, T., Labanowski, J., Cournoyer, B., Chardon, C., Keck, F., Laurent, É., Mondamert, L., Vasselon, V., Wiest, L., Bouchez, A., 2017. River biofilm community changes related to pharmaceutical loads emitted by a wastewater treatment plant. Environmental Science and Pollution Research 1-11. https://doi.org/10.1007/s11356-017-0024-0


  • Chonova, T., Lecomte, V., Bertrand-Krajewski, J.-L., Bouchez, A., Labanowski, J., Dagot, C., Lévi, Y., Perrodin, Y., Wiest, L., Gonzalez-Ospina, A., Cournoyer, B., Sebastian, C., 2017. The SIPIBEL project: treatment of hospital and urban wastewater in a conventional urban wastewater treatment plant. Environmental Science and Pollution Research 1-10. https://doi.org/10.1007/s11356-017-9302-0


  • Crampon, M., Cébron, A., Portet-Koltalo, F., Uroz, S., Le Derf, F., Bodilis, J., 2017. Low effect of phenanthrene bioaccessibility on its biodegradation in diffusely contaminated soil. Environmental Pollution 225, 663-673. https://doi.org/10.1016/j.envpol.2017.03.053


  • Denet, E., Coupat-Goutaland, B., Nazaret, S., Pélandakis, M., Favre-Bonté, S., 2017. Diversity of free-living amoebae in soils and their associated human opportunistic bacteria. Parasitology Research. https://doi.org/10.1007/s00436-017-5632-6

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