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Article de revue

  • Almario J, et al. 2017. Distribution of 2,4-diacetylphloroglucinol biosynthetic genes among the Pseudomonas spp. reveals unexpected polyphyletism. Frontiers in Microbiology. 8. doi: 10.3389/fmicb.2017.01218.

  • Bardon C, et al. 2017. Biological denitrification inhibition (BDI) with procyanidins induces modification of root traits, growth and N status in Fallopia x bohemica. Soil Biology and Biochemistry. 107:41-49. doi: 10.1016/j.soilbio.2016.12.009.

  • Barot S, et al. 2017. Designing mixtures of varieties for multifunctional agriculture with the help of ecology. A review. Agronomy for Sustainable Development. 37:13. doi: 10.1007/s13593-017-0418-x.

  • Blondel C, et al. 2017. Assessing the dynamic changes of rhizosphere functionality of Zea mays plants grown in organochlorine contaminated soils. Journal of Hazardous Materials. 331:226-234. doi: 10.1016/j.jhazmat.2017.02.056.

  • Bouri M, et al. 2017. A simple and stable method of tagging Agrobacterium fabrum C58 for environmental monitoring. Phytopathologia Mediterranea. 56:1-9. doi: 10.14601/Phytopathol_Mediterr-18072.

  • Chapalain A, et al. 2017. Interplay between 4-hydroxy-3-methyl-2-alkylquinoline and N-acyl-homoserine lactone signaling in a Burkholderia cepacia complex clinical strain. Frontiers in Microbiology. 8. doi: 10.3389/fmicb.2017.01021.

  • Chonova T, et al. 2017. The SIPIBEL project: treatment of hospital and urban wastewater in a conventional urban wastewater treatment plant. Environmental Science and Pollution Research. 1-10. doi: 10.1007/s11356-017-9302-0.

  • Crampon M, et al. 2017. Low effect of phenanthrene bioaccessibility on its biodegradation in diffusely contaminated soil. Environmental Pollution. 225:663-673. doi: 10.1016/j.envpol.2017.03.053.

  • Denet E, Coupat-Goutaland B, Nazaret S, Pélandakis M, Favre-Bonté S. 2017. Diversity of free-living amoebae in soils and their associated human opportunistic bacteria. Parasitology Research. doi: 10.1007/s00436-017-5632-6.

  • Doré J, et al. 2017. The ectomycorrhizal basidiomycete Hebeloma cylindrosporum undergoes early waves of transcriptional reprogramming prior to symbiotic structures differentiation. Environmental Microbiology. n/a-n/a. doi: 10.1111/1462-2920.13670.

  • El Moujahid L, et al. 2017. Effect of plant diversity on the diversity of soil organic compounds. PLOS ONE. 12:e0170494. doi: 10.1371/journal.pone.0170494.

  • Eymery M, et al. 2017. 164 Are viral respiratory infections a real issue in infants with cystic fibrosis: preliminary results of a prospective cohort study. Journal of Cystic Fibrosis. 16, Supplement 1:S108. doi: 10.1016/S1569-1993(17)30528-3.

  • Florio A, Pommier T, Gervaix J, Bérard A, Le Roux X. 2017. Soil C and N statuses determine the effect of maize inoculation by plant growth-promoting rhizobacteria on nitrifying and denitrifying communities. Scientific Reports. 7. doi: 10.1038/s41598-017-08589-4.

  • Galia W, et al. 2017. Strand-specific transcriptomes of Enterohemorrhagic Escherichia coli in response to interactions with ground beef microbiota: interactions between microorganisms in raw meat. BMC Genomics. 18:574. doi: 10.1186/s12864-017-3957-2.

  • Guyonnet JP, et al. 2017. The effects of plant nutritional strategy on soil microbial denitrification activity through rhizosphere primary metabolites. FEMS Microbiology Ecology. 93. doi: 10.1093/femsec/fix022.

  • Hay AE, et al. 2017. Control of Endophytic Frankia Sporulation by Alnus Nodule Metabolites. Molecular Plant-Microbe Interactions. 30:205-214. doi: 10.1094/MPMI-11-16-0235-R.

  • Hugoni M, Vellet A, Debroas D. 2017. Unique and highly variable bacterial communities inhabiting the surface microlayer of an oligotrophic lake. Aquatic Microbial Ecology. 79:115-125. doi: 10.3354/ame01825.

  • Keshavarz-Tohid V, et al. 2017. Phylogenetic diversity and antagonistic traits of root and rhizosphere pseudomonads of a bean from Iran for controlling Rhizoctonia solani. Research in Microbiology. doi: 10.1016/j.resmic.2017.08.002.

  • Le Quéré A, et al. 2017. Genomic characterization of Ensifer aridi, a proposed new species of nitrogen-fixing rhizobium recovered from Asian, African and American deserts. BMC Genomics. 18:85. doi: 10.1186/s12864-016-3447-y.

  • Legay N, et al. 2017. Soil legacy effects of climatic stress, management and plant functional composition on microbial communities influence the response of Lolium perenne to a new drought event. Plant and Soil. doi: 10.1007/s11104-017-3403-x.

  • Lemanceau P, Blouin M, Muller D, Moënne-Loccoz Y. 2017. Let the Core Microbiota Be Functional. Trends in Plant Science. 22:583-595. doi: 10.1016/j.tplants.2017.04.008.

  • López-Lozano NE, et al. 2017. Denitrifying bacterial communities display different temporal fluctuation patterns across Dutch agricultural soils. Antonie van Leeuwenhoek. 1-13. doi: 10.1007/s10482-017-0898-3.

  • Michalet S, et al. 2017. Tolerance of Japanese knotweed s.l. to soil artificial polymetallic pollution: early metabolic responses and performance during vegetative multiplication. Environmental Science and Pollution Research. 1-11. doi: 10.1007/s11356-017-9716-8.

  • Minard G, et al. 2017. Identification of sympatric cryptic species of Aedes albopictus subgroup in Vietnam: new perspectives in phylosymbiosis of insect vector. Parasites & Vectors. 10:276. doi: 10.1186/s13071-017-2202-9.

  • Pages-Monteiro L, et al. 2017. Strong incidence of Pseudomonas aeruginosa on bacterial rrs and ITS genetic structures of cystic fibrosis sputa. PLOS ONE. 12:e0173022. doi: 10.1371/journal.pone.0173022.

  • Pham HN, et al. 2017. Impact of metal stress on the production of secondary metabolites in Pteris vittata L. and associated rhizosphere bacterial communities. Environmental Science and Pollution Research. 1-16. doi: 10.1007/s11356-017-9167-2.

  • Roy M, et al. 2017. Alder and the Golden Fleece: high diversity of Frankia and ectomycorrhizal fungi revealed from Alnus glutinosa subsp. barbata roots close to a Tertiary and glacial refugium. PeerJ. 5:e3479. doi: 10.7717/peerj.3479.

  • Salles JF, et al. 2017. Successional patterns of key genes and processes involved in the microbial nitrogen cycle in a salt marsh chronosequence. Biogeochemistry. 1-17. doi: 10.1007/s10533-017-0296-y.

  • Sánchez-Herrera K, et al. 2017. Molecular identification of Nocardia species using the sod A gene. New Microbes and New Infections. 19:96-116. doi: 10.1016/j.nmni.2017.03.008.

  • Simonin M, et al. 2017. Toxicity of TiO2 nanoparticles on soil nitrification at environmentally relevant concentrations: Lack of classical dose–response relationships. Nanotoxicology. 1-9. doi: 10.1080/17435390.2017.1290845.

  • Vacheron J, et al. 2017. Differential contribution of plant-beneficial functions from Pseudomonas kilonensis F113 to root system architecture alterations in Arabidopsis thaliana and Zea mays. Molecular plant-microbe interactions: MPMI. doi: 10.1094/MPMI-07-17-0185-R.

  • Vacheron J, Dubost A, Chapulliot D, Prigent-Combaret C, Muller D. 2017. Draft Genome Sequence of Chryseobacterium sp. JV274 Isolated from Maize Rhizosphere. Genome Announcements. 5:e00122-17. doi: 10.1128/genomeA.00122-17.

  • Vacheron J, Dubost A, Chapulliot D, Prigent-Combaret C, Muller D. 2017. Draft Genome Sequence of Chryseobacterium sp. JV274 Isolated from Maize Rhizosphere. Genome Announcements. 5:e00122-17. doi: 10.1128/genomeA.00122-17.


Article de revue

  • Attard E, et al. 2016. Delayed and asymmetric responses of soil C pools and N fluxes to grassland/cropland conversions. Soil Biology and Biochemistry. 97:31-39. doi: 10.1016/j.soilbio.2016.02.016.

  • Barbi F, et al. 2016. Tree species select diverse soil fungal communities expressing different sets of lignocellulolytic enzyme-encoding genes. Soil Biology and Biochemistry. 100:149-159. doi: 10.1016/j.soilbio.2016.06.008.

  • Bardon C, et al. 2016. Mechanism of biological denitrification inhibition (BDI): procyanidins induce an allosteric transition of the membrane-bound NO3-reductase through membrane alteration. FEMS Microbiology Ecology. fiw034. doi: 10.1093/femsec/fiw034.

  • Baude J, et al. 2016. Coordinated Regulation of Species-Specific Hydroxycinnamic Acid Degradation and Siderophore Biosynthesis Pathways in Agrobacterium fabrum. Applied and Environmental Microbiology. 82:AEM.00419-16. doi: 10.1128/AEM.00419-16.

  • Bodilis J, et al. 2016. Draft Genome Sequences of Stenotrophomonas maltophilia Strains Sm32COP, Sm41DVV, Sm46PAILV, SmF3, SmF22, SmSOFb1, and SmCVFa1, Isolated from Different Manures in France. Genome Announcements. 4:e00841-16. doi: 10.1128/genomeA.00841-16.

  • Bonanno L, Petit M-A, Loukiadis E, Michel V, Auvray F. 2016. Heterogeneity in Induction Level, Infection Ability, and Morphology of Shiga Toxin-Encoding Phages (Stx Phages) from Dairy and Human Shiga Toxin-Producing Escherichia coli O26:H11 Isolates Dudley, EG. Applied and Environmental Microbiology. 82:2177-2186. doi: 10.1128/AEM.03463-15.

  • BORLAND S, PRIGENT-COMBARET C, WISNIEWSKI-DYE F. 2016. Bacterial hybrid histidine kinases in plant-bacteria interactions. Microbiology. doi: 10.1099/mic.0.000370.

  • Bouffaud M-L, Renoud S, Moënne-Loccoz Y, Muller D. 2016. Is plant evolutionary history impacting recruitment of diazotrophs and nifH expression in the rhizosphere? Scientific Reports. 6:21690. doi: 10.1038/srep21690.

  • Boukerb AM, et al. 2016. Genomic Rearrangements and Functional Diversification of lecA and lecB Lectin-Coding Regions Impacting the Efficacy of Glycomimetics Directed against Pseudomonas aeruginosa. Antimicrobials, Resistance and Chemotherapy. 811. doi: 10.3389/fmicb.2016.00811.

  • Carro L, et al. 2016. Organic acids metabolism in Frankia alni. Symbiosis. 1-12. doi: 10.1007/s13199-016-0404-0.

  • Cavé L, et al. 2016. Efficiency and sensitivity of the digital droplet PCR for the quantification of antibiotic resistance genes in soils and organic residues. Applied Microbiology and Biotechnology. 1-12. doi: 10.1007/s00253-016-7950-5.

  • Cormier F, et al. 2016. Breeding for increased nitrogen-use efficiency: a review for wheat (T. aestivum L.). Plant Breeding. 135:255-278. doi: 10.1111/pbr.12371.

  • Coussement J, et al. 2016. Nocardia infection in solid organ transplant recipients: a multicenter European case-control study. Clinical Infectious Diseases. ciw241. doi: 10.1093/cid/ciw241.

  • Dangles O, et al. 2016. Research on Biodiversity and Climate Change at a Distance: Collaboration Networks between Europe and Latin America and the Caribbean. PLOS ONE. 11:e0157441. doi: 10.1371/journal.pone.0157441.

  • Debing Y, et al. 2016. Hepatitis E virus mutations associated with ribavirin treatment failure result in altered viral fitness and ribavirin sensitivity. Journal of Hepatology. doi: 10.1016/j.jhep.2016.05.002.

  • Deredjian A, et al. 2016. Occurrence of Stenotrophomonas maltophilia in agricultural soils and antibiotic resistance properties. Research in Microbiology. doi: 10.1016/j.resmic.2016.01.001.

  • Douëllou T, et al. 2016. Shiga toxin-producing Escherichia coli strains isolated from dairy products — Genetic diversity and virulence gene profiles. International Journal of Food Microbiology. 232:52-62. doi: 10.1016/j.ijfoodmicro.2016.04.032.

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