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Autres ...

2018

Article de revue


  • Besset-Manzoni, Y., Rieusset, L., Joly, P., Comte, G., Prigent-Combaret, C., 2018. Exploiting rhizosphere microbial cooperation for developing sustainable agriculture strategies. Environmental Science and Pollution Research 1-18. https://doi.org/10.1007/s11356-017-1152-2


  • Bounaffaa, M., Florio, A., Le Roux, X., Jayet, P.-A., 2018. Economic and Environmental Analysis of Maize Inoculation by Plant Growth Promoting Rhizobacteria in the French Rhône-Alpes Region. Ecological Economics 146, 334-346. https://doi.org/10.1016/j.ecolecon.2017.11.009


  • Denet, E., Vasselon, V., Burdin, B., Nazaret, S., Favre-Bonté, S., 2018. Survival and growth of Stenotrophomonas maltophilia in free-living amoebae (FLA) and bacterial virulence properties. PLOS ONE 13, e0192308. https://doi.org/10.1371/journal.pone.0192308


  • Destoumieux-Garzón, D., Mavingui, P., Boetch, G., Boissier, J., Darriet, F., Duboz, P., Fritsch, C., Giraudoux, P., Le Roux, F., Morand, S., Paillard, C., Pontier, D., Sueur, C., Voituron, Y., 2018. The One Health concept: 10 years old and a long road ahead. Frontiers in Veterinary Science 5. https://doi.org/10.3389/fvets.2018.00014


  • Ghedira, K., Harigua-Souiai, E., Hamda, C., Fournier, P., Pujic, P., Guesmi, S., Guizani, I., Miotello, G., Armengaud, J., Normand, P., Sghaier, H., 2018. The PEG-responding desiccome of the alder microsymbiont Frankia alni. Scientific Reports 8, 759. https://doi.org/10.1038/s41598-017-18839-0


  • Lavergne, C., Hugoni, M., Hubas, C., Debroas, D., Dupuy, C., Agogué, H., 2018. Diel Rhythm Does Not Shape the Vertical Distribution of Bacterial and Archaeal 16S rRNA Transcript Diversity in Intertidal Sediments: a Mesocosm Study. Microbial Ecology 75, 364-374. https://doi.org/10.1007/s00248-017-1048-1


  • Leloup, J., Baude, M., Nunan, N., Meriguet, J., Dajoz, I., Le Roux, X., Raynaud, X., 2018. Unravelling the effects of plant species diversity and aboveground litter input on soil bacterial communities. Geoderma 317, 1-7. https://doi.org/10.1016/j.geoderma.2017.12.018

  • Lurthy, T., Alloisio, N., Fournier, P., Anchisi, S., Ponsero, A., Normand, P., Pujic, P., Boubakri, H., 2018. For publication Molecular response to nitrogen starvation by Frankia alni ACN14a revealed by transcriptomics and functional analysis with a fosmid library in Escherichia coli. Research in Microbiology. https://doi.org/10.1016/j.resmic.2017.12.002


  • Mallon, C.A., Roux, X., Doorn, G.S., Dini-Andreote, F., Poly, F., Salles, J.F., 2018. The impact of failure: unsuccessful bacterial invasions steer the soil microbial community away from the invader’s niche. The ISME Journal 1. https://doi.org/10.1038/s41396-017-0003-y


  • Pommier, T., Cantarel, A.A.M., Grigulis, K., Lavorel, S., Legay, N., Baxendale, C., Bardgett, R.D., Bahn, M., Poly, F., Clément, J.-C., 2018. The added value of including key microbial traits to determine nitrogen-related ecosystem services in managed grasslands. Journal of Applied Ecology 55, 49-58. https://doi.org/10.1111/1365-2664.13010

  • Pozzi, A.C., Roy, M., Nagati, M., Schwob, G., Manzi, S., Gardes, M., Moreau, P.-A., Fernandez, M.P., 2018. Patterns of diversity, endemism and specialization in the root symbiont communities of alder species on the island of Corsica. The New Phytologist. https://doi.org/10.1111/nph.14996


  • Rouifed, S., Puijalon, S., Bardon, C., Meiffren, G., Buonomo, A., Sebei, N., Poussineau, S., Vallier, F., Shimoda, M., Piola, F., 2018. Comparison of defence and performance traits between one widespread clone and native populations in a major invasive plant species. Diversity and Distributions. https://doi.org/10.1111/ddi.12690


  • Srikanthasamy, T., Leloup, J., N'Dri, A.B., Barot, S., Gervaix, J., Koné, A.W., Koffi, K.F., Le Roux, X., Raynaud, X., Lata, J.-C., 2018. Contrasting effects of grasses and trees on microbial N-cycling in an African humid savanna. Soil Biology and Biochemistry 117, 153-163. https://doi.org/10.1016/j.soilbio.2017.11.016


  • Sutherland, W.J., Butchart, S.H.M., Connor, B., Culshaw, C., Dicks, L.V., Dinsdale, J., Doran, H., Entwistle, A.C., Fleishman, E., Gibbons, D.W., Jiang, Z., Keim, B., Roux, X.L., Lickorish, F.A., Markillie, P., Monk, K.A., Mortimer, D., Pearce-Higgins, J.W., Peck, L.S., Pretty, J., Seymour, C.L., Spalding, M.D., Tonneijck, F.H., Gleave, R.A., 2018. A 2018 Horizon Scan of Emerging Issues for Global Conservation and Biological Diversity. Trends in Ecology & Evolution 33, 47-58. https://doi.org/10.1016/j.tree.2017.11.006

2017

Article de revue


  • Adamo, M., Voyron, S., Girlanda, M., Marmeisse, R., 2017. RNA extraction from decaying wood for (meta)transcriptomic analyses. Canadian Journal of Microbiology 63, 841-850. https://doi.org/10.1139/cjm-2017-0230


  • Almario, J., Bruto, M., Vacheron, J., Prigent-Combaret, C., Moënne-Loccoz, Y., Muller, D., 2017. Distribution of 2,4-diacetylphloroglucinol biosynthetic genes among the Pseudomonas spp. reveals unexpected polyphyletism. Frontiers in Microbiology 8, 1218. https://doi.org/10.3389/fmicb.2017.01218
  • Anne-Emmanuelle, H., Hasna, B., Antoine, B., Marjolaine, R., Guillaume, M., Laetitia, C.-G., Gilles, C., Aude, H.-B., 2017. Control of Endophytic Frankia Sporulation by Alnus Nodule Metabolites. Molecular Plant-Microbe Interactions 30, 205–214.


  • Assémien, F.L., Pommier, T., Gonnety, J.T., Gervaix, J., Le Roux, X., 2017. Adaptation of soil nitrifiers to very low nitrogen level jeopardizes the efficiency of chemical fertilization in west african moist savannas. Scientific Reports 7. https://doi.org/10.1038/s41598-017-10185-5


  • Bardon, C., Poly, F., Haichar, F.Z., Le Roux, X., Simon, L., Meiffren, G., Comte, G., Rouifed, S., Piola, F., 2017. Biological denitrification inhibition (BDI) with procyanidins induces modification of root traits, growth and N status in Fallopia x bohemica. Soil Biology and Biochemistry 107, 41-49. https://doi.org/10.1016/j.soilbio.2016.12.009


  • Barot, S., Allard, V., Cantarel, A., Enjalbert, J., Gauffreteau, A., Goldringer, I., Lata, J.-C., Le Roux, X., Niboyet, A., Porcher, E., 2017. Designing mixtures of varieties for multifunctional agriculture with the help of ecology. A review. Agronomy for Sustainable Development 37, 13. https://doi.org/10.1007/s13593-017-0418-x


  • Bernardin Souibgui, C., Zoropogui, A., Voisin, J., Ribun, S., Vasselon, V., Pujic, P., Rodriguez-Nava, V., Belly, P., Cournoyer, B., Blaha, D., 2017. Virulence test using nematodes to prescreen <i>Nocardia</i> species capable of inducing neurodegeneration and behavioral disorders. PeerJ 5, e3823. https://doi.org/10.7717/peerj.3823


  • Bertin, Y., Habouzit, C., Dunière, L., Laurier, M., Durand, A., Duchez, D., Segura, A., Thévenot-Sergentet, D., Baruzzi, F., Chaucheyras-Durand, F., Forano, E., 2017. Lactobacillus reuteri suppresses E. coli O157:H7 in bovine ruminal fluid: Toward a pre-slaughter strategy to improve food safety? PLOS ONE 12, e0187229. https://doi.org/10.1371/journal.pone.0187229


  • Blondel, C., Briset, L., Legay, N., Arnoldi, C., Poly, F., Clément, J.-C., Raveton, M., 2017. Assessing the dynamic changes of rhizosphere functionality of Zea mays plants grown in organochlorine contaminated soils. Journal of Hazardous Materials 331, 226-234. https://doi.org/10.1016/j.jhazmat.2017.02.056


  • Bouri, M., Gharsa, H.B., Vial, L., Lavire, C., Glick, B.R., Rhouma, A., 2017. A simple and stable method of tagging Agrobacterium fabrum C58 for environmental monitoring. Phytopathologia Mediterranea 56, 1-9. https://doi.org/10.14601/Phytopathol_Mediterr-18072


  • Canouï, E., Blanc, K., Loubinoux, J., Valade, S., Hamard, C., Lefebvre, A., Amorim, S., Bébéar, C., Rodriguez-Nava, V., Lebeaux, D., Launay, O., Alifano, M., Rabbat, A., Kernéis, S., 2017. The value of molecular techniques to diagnose Ureaplasma urealyticum and Nocardia farcinica pleuropneumonia in a patient with diffuse large B-cell lymphoma. International Journal of Infectious Diseases 64, 93-95. https://doi.org/10.1016/j.ijid.2017.09.015


  • Chapalain, A., Groleau, M.-C., Le Guillouzer, S., Miomandre, A., Vial, L., Milot, S., Déziel, E., 2017. Interplay between 4-hydroxy-3-methyl-2-alkylquinoline and N-acyl-homoserine lactone signaling in a Burkholderia cepacia complex clinical strain. Frontiers in Microbiology 8. https://doi.org/10.3389/fmicb.2017.01021


  • Chonova, T., Labanowski, J., Cournoyer, B., Chardon, C., Keck, F., Laurent, É., Mondamert, L., Vasselon, V., Wiest, L., Bouchez, A., 2017. River biofilm community changes related to pharmaceutical loads emitted by a wastewater treatment plant. Environmental Science and Pollution Research 1-11. https://doi.org/10.1007/s11356-017-0024-0


  • Chonova, T., Lecomte, V., Bertrand-Krajewski, J.-L., Bouchez, A., Labanowski, J., Dagot, C., Lévi, Y., Perrodin, Y., Wiest, L., Gonzalez-Ospina, A., Cournoyer, B., Sebastian, C., 2017. The SIPIBEL project: treatment of hospital and urban wastewater in a conventional urban wastewater treatment plant. Environmental Science and Pollution Research 1-10. https://doi.org/10.1007/s11356-017-9302-0


  • Crampon, M., Cébron, A., Portet-Koltalo, F., Uroz, S., Le Derf, F., Bodilis, J., 2017. Low effect of phenanthrene bioaccessibility on its biodegradation in diffusely contaminated soil. Environmental Pollution 225, 663-673. https://doi.org/10.1016/j.envpol.2017.03.053


  • Denet, E., Coupat-Goutaland, B., Nazaret, S., Pélandakis, M., Favre-Bonté, S., 2017. Diversity of free-living amoebae in soils and their associated human opportunistic bacteria. Parasitology Research. https://doi.org/10.1007/s00436-017-5632-6


  • Dickson, L.B., Jiolle, D., Minard, G., Moltini-Conclois, I., Volant, S., Ghozlane, A., Bouchier, C., Ayala, D., Paupy, C., Moro, C.V., Lambrechts, L., 2017. Carryover effects of larval exposure to different environmental bacteria drive adult trait variation in a mosquito vector. Science Advances 3, e1700585. https://doi.org/10.1126/sciadv.1700585


  • Doré, J., Kohler, A., Dubost, A., Lindquist, E., Kuo, A., Grigoriev, I.V., Martin, F., Marmeisse, R., Gay, G., 2017. The ectomycorrhizal basidiomycete Hebeloma cylindrosporum undergoes early waves of transcriptional reprogramming prior to symbiotic structures differentiation. Environmental Microbiology 19, 1338–1354. https://doi.org/10.1111/1462-2920.13670


  • Douëllou, T., Delannoy, S., Ganet, S., Fach, P., Loukiadis, E., Montel, M.-C., Sergentet-Thevenot, D., 2017. Molecular characterization of O157:H7, O26:H11 and O103:H2 Shiga toxin-producing Escherichia coli isolated from dairy products. International Journal of Food Microbiology 253, 59-65. https://doi.org/10.1016/j.ijfoodmicro.2017.04.010


  • El Moujahid, L., Le Roux, X., Michalet, S., Bellvert, F., Weigelt, A., Poly, F., 2017. Effect of plant diversity on the diversity of soil organic compounds. PLOS ONE 12, e0170494. https://doi.org/10.1371/journal.pone.0170494


  • Eymery, M., Reix, P., Morfin, F., Doleans-Jordheim, A., Vrielynck, S., Jubin, V., Perceval, M., 2017. 164 Are viral respiratory infections a real issue in infants with cystic fibrosis: preliminary results of a prospective cohort study. Journal of Cystic Fibrosis, Abstracts of the 40th European Cystic Fibrosis Conference 16, Supplement 1, S108. https://doi.org/10.1016/S1569-1993(17)30528-3


  • Florio, A., Pommier, T., Gervaix, J., Bérard, A., Le Roux, X., 2017. Soil C and N statuses determine the effect of maize inoculation by plant growth-promoting rhizobacteria on nitrifying and denitrifying communities. Scientific Reports 7. https://doi.org/10.1038/s41598-017-08589-4


  • Galia, W., Leriche, F., Cruveiller, S., Garnier, C., Navratil, V., Dubost, A., Blanquet-Diot, S., Thevenot-Sergentet, D., 2017. Strand-specific transcriptomes of Enterohemorrhagic Escherichia coli in response to interactions with ground beef microbiota: interactions between microorganisms in raw meat. BMC Genomics 18, 574. https://doi.org/10.1186/s12864-017-3957-2


  • Goubert, C., Henri, H., Minard, G., Valiente Moro, C., Mavingui, P., Vieira, C., Boulesteix, M., 2017. High-throughput sequencing of transposable element insertions suggests adaptive evolution of the invasive Asian tiger mosquito towards temperate environments. Molecular Ecology 26, 3968-3981. https://doi.org/10.1111/mec.14184


  • Guyonnet, J.P., Vautrin, F., Meiffren, G., Labois, C., Cantarel, A.A.M., Michalet, S., Comte, G., Haichar, F.Z., 2017. The effects of plant nutritional strategy on soil microbial denitrification activity through rhizosphere primary metabolites. FEMS Microbiology Ecology 93. https://doi.org/10.1093/femsec/fix022


  • Habbadi, K., Meyer, T., Vial, L., Gaillard, V., Benkirane, R., Benbouazza, A., Kerzaon, I., Achbani, E.H., Lavire, C., 2017. Essential oils of Origanum compactum and Thymus vulgaris exert a protective effect against the phytopathogen Allorhizobium vitis. Environmental Science and Pollution Research International 1-10. https://doi.org/10.1007/s11356-017-1008-9


  • Hay, A.E., Boubakri, H., Buonomo, A., Rey, M., Meiffren, G., Cotin-Galvan, L., Comte, G., Herrera-Belaroussi, A., 2017. Control of Endophytic Frankia Sporulation by Alnus Nodule Metabolites. Molecular Plant-Microbe Interactions 30, 205-214. https://doi.org/10.1094/MPMI-11-16-0235-R


  • Hugoni, M., Vellet, A., Debroas, D., 2017. Unique and highly variable bacterial communities inhabiting the surface microlayer of an oligotrophic lake. Aquatic Microbial Ecology 79, 115-125. https://doi.org/10.3354/ame01825


  • Joffard, N., Legendre, L., Gibernau, M., Pascal, L., 2017. Differential Accumulation of Volatile Organic Compounds by Leaves and Roots of Two Guianese Philodendron Species, P. fragrantissimum Kunth and P. melinonii Brongn. Chemistry & Biodiversity 14, e1600415. https://doi.org/10.1002/cbdv.201600415


  • Jurburg, S.D., Nunes, I., Stegen, J.C., Le Roux, X., Priemé, A., Sørensen, S.J., Salles, J.F., 2017. Autogenic succession and deterministic recovery following disturbance in soil bacterial communities. Scientific Reports 7. https://doi.org/10.1038/srep45691
  • Kasrati, A., Alaoui Jamali, C., Spooner-Hart, R., Legendre, L., Leach, D., Abbad, A., 2017. Chemical Characterization and Biological Activities of Essential Oil Obtained from Mint Timija Cultivated under Mineral and Biological Fertilizers. Journal of analytical methods in chemistry 2017.

  • Kasrati, A., Alaoui Jamali, C., Spooner-Hart, R., Legendre, L., Leach, D., Abbad, A., 2017. Chemical Characterization and Biological Activities of Essential Oil Obtained from Mint Timija Cultivated under Mineral and Biological Fertilizers. Journal of Analytical Methods in Chemistry.


  • Kerangart, S., Cournoyer, B., Loukiadis, E., 2017. C-source metabolic profilings of foodborne Shiga-toxin producing E. coli match serogroup differentiations and highlight functional adaptations. International Journal of Food Microbiology. https://doi.org/10.1016/j.ijfoodmicro.2017.10.018


  • Keshavarz-Tohid, V., Taheri, P., Muller, D., Prigent-Combaret, C., Vacheron, J., Taghavi, S.M., Tarighi, S., Moënne-Loccoz, Y., 2017. Phylogenetic diversity and antagonistic traits of root and rhizosphere pseudomonads of bean from Iran for controlling Rhizoctonia solani. Research in Microbiology 168, 760-772. https://doi.org/10.1016/j.resmic.2017.08.002


  • Larousse, M., Rancurel, C., Syska, C., Palero, F., Etienne, C., Industri, B., Nesme, X., Bardin, M., Galiana, E., 2017. Tomato root microbiota and Phytophthora parasitica-associated disease. Microbiome 5, 56. https://doi.org/10.1186/s40168-017-0273-7


  • Lassalle, F., Planel, R., Penel, S., Chapulliot, D., Barbe, V., Dubost, A., Calteau, A., Vallenet, D., Mornico, D., Bigot, T., Guéguen, L., Vial, L., Muller, D., Daubin, V., Nesme, X., 2017. Ancestral Genome Estimation Reveals the History of Ecological Diversification in Agrobacterium. Genome Biology and Evolution 9, 3413-3431. https://doi.org/10.1093/gbe/evx255

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