Site languages :

Partenaires

CNRS
UCBL
INRA
ENVL
FR41
IDEX




Search

On this website


Home > Research Teams > Diversité fonctionnelle microbienne et Cycle de l’Azote

Microbial functional diversity and nitrogen cycle

Team Leaders: LE ROUX Xavier & POMMIER Thomas

Team:

Permanent positions

CANTAREL Amelie Professor Assistant, UCB
CZARNES Sonia Professor Assistant, UCB
FLORIO Alessandro Scientist, INRA
LE ROUX Xavier Senior Scientist, INRA
POMMIER Thomas Scientist, INRA
RICHAUME-JOLION Agnès Professor, UCB
GERVAIX Jonathan Technician, UCB
LERONDELLE Catherine Engineer, INRA

Non permanent positions

Lise ALONSO PhD DRAC, (2014-2017)
Féline ASSEMIEN PhD co-tutelle RCI, (2013-2016)
Huong LE THI PhD ANR, (2015-2018)
Yujie SHI Phd CSC, (2014-2016)

 

Micro-organisms are largely responsible for the flow of matter and energy in the biosphere and are important actors in the functioning and dynamics of ecosystems. We focus our research on 2 bacterial functional groups involved in the nitrogen cycle (nitrifiers, denitrifiers) and to a lesser extent on mineralizers and free nitrogen fixers. These functional groups are responsible for complementary processes that are key steps in the nitrogen cycle. The group of nitrifiers, responsible for the oxidation of ammoniacal and / or nitrous nitrogen) and the group of denitrifiers, responsible for the reduction of the oxidized forms of nitrogen, are functionally connected at the level of nitrite and / or nitrate. Nitrification, denitrification and fixation participate jointly and in connection with mineralization in the control of nitrogen exchanges between the biosphere and the atmosphere and in the equilibrium between the main forms of mineral nitrogen assimilable by plants (ammonium and nitrate). Nitrification and denitrification are involved in the loss of nitrogen from the soil system, in the control of the nitric load of surface or phreatic waters, as well as in the emission of trace pollutant gases (nitrogen oxides).

Our research themes are organized schematically in four main areas :

  • An important aspect of the work of our team is the study of the mechanisms of regulation of the intensity of the functions ensured by model microorganisms or functional groups of model microorganisms, taking into account the different levels of regulation possible, namely the the diversity, diversity and functionality of these organizations. An important issue here is to elucidate the modalities of the expression of genes encoding key enzymes (nitrate reductase, nitrite oxido-reductase ...) in the laboratory and in natural conditions. This makes it possible to specify the determinism of the niche of these organisms and their distribution in space.
  • A second key aspect of our work is to analyze the diversity-function relationships in these microbial groups, and more specifically to evaluate the role of taxonomic and functional diversity, in interactions with environmental conditions, on the achievement of the function provided. by these model microbial groups. The notion of functional complementarity between microorganisms with different niches is particularly used to better understand the diversity-functioning relationships.
  • A third important aspect of our team’s work is to evaluate the effect of plant diversity, and in particular plant functional diversity, on the diversity and functioning of nitrifying and denitrifying groups. This takes into account different types of possible mechanisms, ranging from direct impacts of plants on microbial communities (exudation of specific compounds having a trophic or even signaling role) to indirect impacts on environmental variables influencing microbial groups.
  • Finally, a fourth key aspect of our work is the study of the effects of different factors of global changes (climate change and / or changes in land use patterns) and the ecology of stress (extreme events, pollutants) on the environment. activity, size and diversity of model functional groups, focusing on their role in the functioning of ecosystems.

To achieve these objectives, our team has standard tools and innovative tools to characterize the workforce (quantitative PCR, flow cytometry), diversity (metagenomics and high-throughput sequencing targeting particular genes specific functional groups ... ), the key enzyme pools (serology) and the activity (measurement by gas chromatography, 15N isotope dilution crude nitrogen flux measurement) of the nitrifying, denitrifying and fixing groups as well as the bacterial community as a whole. It should be noted that our team has developed for the first time a tool to characterize the diversity of the Nitrobacter nitrating community in environmental samples by targeting the nxrA gene. In order to characterize the mechanisms regulating denitrification and nitrification, our team uses bacterial genetics methods (transcriptional and translational fusion, mutant construction, measurement of ß-galactosidase activity ...). Our team is also increasingly using analytical methods to characterize the diversity of natural substances in the rhizosphere and soil, as well as the bacterial metabolome. Finally, to address the high-throughput approaches of modern biology, we regularly use robotic methods available in the laboratory.

In addition, members of the team have a key role in major research and training projects of regional, national and international scope :

  • The Institute of Environmental Engineering and Ecodevelopment (IG2E) is directed by A. Richaume-Jolion (http://ig2e.univ-lyon1.fr/).
  • The European network BiodivERsA, supported by the European Commission through its H2020 programme, is coordinated by X. Le Roux (www.biodiversa.org).

 

Publications

 

Scientific papers :

 

2018



  • Alonso, L., Creuzé-des-Châtelliers, C., Trabac, T., Dubost, A., Moënne-Loccoz, Y., & Pommier, T. (2018). Rock substrate rather than black stain alterations drives microbial community structure in the passage of Lascaux Cave. Microbiome, 6(1), 216. doi:10.1186/s40168-018-0599-9


  • Bardon, C., Misery, B., Piola, F., Poly, F., & Le Roux, X. (2018). Control of soil N cycle processes by <i>Pteridium aquilinum</i> and <i>Erica cinerea</i> in heathlands along a pH gradient. Ecosphere, 9(9), e02426. doi:10.1002/ecs2.2426


  • Bounaffaa, M., Florio, A., Le Roux, X., & Jayet, P. - A. (2018). Economic and Environmental Analysis of Maize Inoculation by Plant Growth Promoting Rhizobacteria in the French Rhône-Alpes Region. Ecological Economics, 146, 334-346. doi:10.1016/j.ecolecon.2017.11.009


  • Capdeville, C., Pommier, T., Gervaix, J., Fromards, F., Rols, J. - L., & Leflaive, J. (2018). Mangrove facies drives resistance and resilience of sediment microbes exposed to anthropic disturbance. Frontiers In Microbiology, 9. doi:10.3389/fmicb.2018.03337


  • Crème, A., Rumpel, C., Le Roux, X., Romian, A., Lan, T., & Chabbi, A. (2018). Ley grassland under temperate climate had a legacy effect on soil organic matter quantity, biogeochemical signature and microbial activities. Soil Biology And Biochemistry, 122, 203-210. doi:10.1016/j.soilbio.2018.04.018


  • Guyonnet, J. P., Guillemet, M., Dubost, A., Simon, L., Ortet, P., Barakat, M., et al. (2018). Plant Nutrient Resource Use Strategies Shape Active Rhizosphere Microbiota Through Root Exudation. Frontiers In Plant Science, 9. doi:10.3389/fpls.2018.01662


  • Guyonnet, J. P., Cantarel, A. A. M., Simon, L., & Haichar, F. Z. (2018). Root exudation rate as functional trait involved in plant nutrient-use strategy classification. Ecology And Evolution, 8(16), 8573-8581. doi:10.1002/ece3.4383


  • Le, H. T., Rochelle-Newall, E., Auda, Y., Ribolzi, O., Sengtaheuanghoung, O., Thébault, E., et al. (2018). Vicinal land use change strongly drives stream bacterial community in a tropical montane catchment. Fems Microbiology Ecology, 94(11). doi:10.1093/femsec/fiy155


  • Leloup, J., Baude, M., Nunan, N., Meriguet, J., Dajoz, I., Le Roux, X., & Raynaud, X. (2018). Unravelling the effects of plant species diversity and aboveground litter input on soil bacterial communities. Geoderma, 317, 1-7. doi:10.1016/j.geoderma.2017.12.018


  • Mallon, C. A., Roux, X., Doorn, G. S., Dini-Andreote, F., Poly, F., & Salles, J. F. (2018). The impact of failure: unsuccessful bacterial invasions steer the soil microbial community away from the invader’s niche. The Isme Journal, 1. doi:10.1038/s41396-017-0003-y


  • Pommier, T., Cantarel, A. A. M., Grigulis, K., Lavorel, S., Legay, N., Baxendale, C., et al. (2018). The added value of including key microbial traits to determine nitrogen-related ecosystem services in managed grasslands. (M. Isaac, Eds.)Journal Of Applied Ecology, 55(1), 49-58. doi:10.1111/1365-2664.13010


  • Simonin, M., Cantarel, A. A. M., Crouzet, A., Gervaix, J., Martins, J. M. F., & Richaume, A. (2018). Negative Effects of Copper Oxide Nanoparticles on Carbon and Nitrogen Cycle Microbial Activities in Contrasting Agricultural Soils and in Presence of Plants. Frontiers In Microbiology, 9. doi:10.3389/fmicb.2018.03102


  • Srikanthasamy, T., Leloup, J., N'Dri, A. B., Barot, S., Gervaix, J., Koné, A. W., et al. (2018). Contrasting effects of grasses and trees on microbial N-cycling in an African humid savanna. Soil Biology And Biochemistry, 117, 153-163. doi:10.1016/j.soilbio.2017.11.016


  • Sutherland, W. J., Butchart, S. H. M., Connor, B., Culshaw, C., Dicks, L. V., Dinsdale, J., et al. (2018). A 2018 Horizon Scan of Emerging Issues for Global Conservation and Biological Diversity. Trends In Ecology & Evolution, 33(1), 47-58. doi:10.1016/j.tree.2017.11.006

2017



  • Assémien, F. L., Pommier, T., Gonnety, J. T., Gervaix, J., & Le Roux, X. (2017). Adaptation of soil nitrifiers to very low nitrogen level jeopardizes the efficiency of chemical fertilization in west african moist savannas. Scientific Reports, 7(1). doi:10.1038/s41598-017-10185-5


  • Bardon, C., Poly, F., Haichar, F. Z., Le Roux, X., Simon, L., Meiffren, G., et al. (2017). Biological denitrification inhibition (BDI) with procyanidins induces modification of root traits, growth and N status in Fallopia x bohemica. Soil Biology And Biochemistry, 107, 41-49. doi:10.1016/j.soilbio.2016.12.009


  • Barot, S., Allard, V., Cantarel, A., Enjalbert, J., Gauffreteau, A., Goldringer, I., et al. (2017). Designing mixtures of varieties for multifunctional agriculture with the help of ecology. A review. Agronomy For Sustainable Development, 37(2), 13. doi:10.1007/s13593-017-0418-x


  • Blondel, C., Briset, L., Legay, N., Arnoldi, C., Poly, F., Clément, J. - C., & Raveton, M. (2017). Assessing the dynamic changes of rhizosphere functionality of Zea mays plants grown in organochlorine contaminated soils. Journal Of Hazardous Materials, 331, 226-234. doi:10.1016/j.jhazmat.2017.02.056


  • El Moujahid, L., Le Roux, X., Michalet, S., Bellvert, F., Weigelt, A., & Poly, F. (2017). Effect of plant diversity on the diversity of soil organic compounds. Plos One, 12(2), e0170494. doi:10.1371/journal.pone.0170494


  • Florio, A., Pommier, T., Gervaix, J., Bérard, A., & Le Roux, X. (2017). Soil C and N statuses determine the effect of maize inoculation by plant growth-promoting rhizobacteria on nitrifying and denitrifying communities. Scientific Reports, 7(1). doi:10.1038/s41598-017-08589-4
  • Florio, A. (2017, April 24). Carbon and nitrogen limitation explain the contrasting responses of rhizospheric N-cycling microbial communities to maize inoculation by Azospirillum lipoferum CRT1. Presented at the European Geosciences Union General Assembly 2017, Vienna.


  • Guyonnet, J. P., Vautrin, F., Meiffren, G., Labois, C., Cantarel, A. A. M., Michalet, S., et al. (2017). The effects of plant nutritional strategy on soil microbial denitrification activity through rhizosphere primary metabolites. Fems Microbiology Ecology, 93(4). doi:10.1093/femsec/fix022


  • Jurburg, S. D., Nunes, I., Stegen, J. C., Le Roux, X., Priemé, A., Sørensen, S. J., & Salles, J. F. (2017). Autogenic succession and deterministic recovery following disturbance in soil bacterial communities. Scientific Reports, 7. doi:10.1038/srep45691


  • Legay, N., Piton, G., Arnoldi, C., Bernard, L., Binet, M. - N., Mouhamadou, B., et al. (2017). Soil legacy effects of climatic stress, management and plant functional composition on microbial communities influence the response of Lolium perenne to a new drought event. Plant And Soil, 1-22. doi:10.1007/s11104-017-3403-x


  • López-Lozano, N. E., Pereira e Silva, M. C., Poly, F., Guillaumaud, N., Van Elsas, J. D., & Salles, J. F. (2017). Denitrifying bacterial communities display different temporal fluctuation patterns across Dutch agricultural soils. Antonie Van Leeuwenhoek, 1-13. doi:10.1007/s10482-017-0898-3


  • Rozier, C., Hamzaoui, J., Lemoine, D., Czarnes, S., & Legendre, L. (2017). Field-based assessment of the mechanism of maize yield enhancement by Azospirillum lipoferum CRT1. Scientific Reports, 7(1), 7416. doi:10.1038/s41598-017-07929-8


  • Salles, J. F., Pereira e Silva, M. C., Dini-Andreote, F., Dias, A. C. F., Guillaumaud, N., Poly, F., & Van Elsas, J. D. (2017). Successional patterns of key genes and processes involved in the microbial nitrogen cycle in a salt marsh chronosequence. Biogeochemistry, 1-17. doi:10.1007/s10533-017-0296-y


  • Schwob, G., Roy, M., Manzi, S., Pommier, T., & Fernandez, Mp. (2017). Green alder (Alnus viridis) encroachment shapes microbial communities in subalpine soils and impacts its bacterial or fungal symbionts differently. Environmental Microbiology, n/a-n/a. doi:10.1111/1462-2920.13818


  • Simonin, M., Martins, J. M. F., Le Roux, X., Uzu, G., Calas, A., & Richaume, A. (2017). Toxicity of TiO2 nanoparticles on soil nitrification at environmentally relevant concentrations: Lack of classical dose–response relationships. Nanotoxicology, 1-9. doi:10.1080/17435390.2017.1290845


  • Weisser, W. W., Roscher, C., Meyer, S., Ebeling, A., Luo, G., Allan, E., et al. (2017). Biodiversity effects on ecosystem functioning in a 15-year grassland experiment: patterns, mechanisms, and open questions. Basic And Applied Ecology, 23, 1-73. doi:10.1016/j.baae.2017.06.002

2016



  • Attard, E., Le Roux, X., Charrier, X., Delfosse, O., Guillaumaud, N., Lemaire, G., & Recous, S. (2016). Delayed and asymmetric responses of soil C pools and N fluxes to grassland/cropland conversions. Soil Biology And Biochemistry, 97, 31-39. doi:10.1016/j.soilbio.2016.02.016


  • Bardon, C., Poly, F., Piola, F., Pancton, M., Comte, G., Meiffren, G., & Haichar, F. Z. (2016). Mechanism of biological denitrification inhibition (BDI): procyanidins induce an allosteric transition of the membrane-bound NO3-reductase through membrane alteration. Fems Microbiology Ecology, 92(5), fiw034. doi:10.1093/femsec/fiw034
  • Cantarel, A. A. M., Andrieu, B., Allard, V., Enjalbert, J., Gervaix, J., Saint Jean, S., et al. (2016). Effects of agricultural wheat selection on plant trait variability and trait syndromes. In .
  • Carro, L., Pujic, P., Alloisio, N., Fournier, P., Boubakri, H., Poly, F., et al. (2016). Physiological effects of major up-regulated Alnus glutinosa peptides on Frankia sp. ACN14a. Microbiology, 162(7), 1173–1184.


  • Dangles, O., Loirat, J., Freour, C., Serre, S., Vacher, J., & Le Roux, X. (2016). Research on Biodiversity and Climate Change at a Distance: Collaboration Networks between Europe and Latin America and the Caribbean. Plos One, 11(6), e0157441. doi:10.1371/journal.pone.0157441


  • Florio, A., Maienza, A., Dell’Abate, M. T., Stazi, S. R., & Benedetti, A. (2016). Changes in the activity and abundance of the soil microbial community in response to the nitrification inhibitor 3,4-dimethylpyrazole phosphate (DMPP). Journal Of Soils And Sediments, 1-11. doi:10.1007/s11368-016-1471-9
  • Florio, A., Pommier, T., Gervaix, J., & Le Roux, X. (2016). Can we manage plant-microbes interactions belowground to increase the sustainability of cropping systems? The case of maize seed inoculation with the beneficial Azospirillum lipoferum CRT1 and its effects on the N-cycling rhizospheric microbial communities. In . Presented at the EcoSummit 2016 Ecological Sustainability.


  • Gignoux, J., Konaté, S., Lahoreau, G., Le Roux, X., & Simioni, G. (2016). Allocation strategies of savanna and forest tree seedlings in response to fire and shading: outcomes of a field experiment. Scientific Reports, 6, 38838. doi:10.1038/srep38838


  • Haichar, F. Z., Heulin, T., Guyonnet, J. P., & Achouak, W. (2016). Stable isotope probing of carbon flow in the plant holobiont. Current Opinion In Biotechnology, 41, 9-13. doi:10.1016/j.copbio.2016.02.023
  • Hugoni, M., Cantarel, A. A. M., Allard, V., Enjalbert, J., Gervaix, J., Saint Jean, S., et al. (2016). Increasing wheat variety diversity within cropped fields can channel soil N dynamics in a favourable status for the sustainability of cropping systems. In .


  • Le, H. T., Ho Tu, C., Trinh, Q. H., Trinh, D. A., Luu, M. T. N., Tran, H. S., et al. (2016). Responses of aquatic bacteria to terrestrial runoff: effects on community structure and key taxonomic groups. Aquatic Microbiology, 7, 889. doi:10.3389/fmicb.2016.00889


  • Legay, N., Lavorel, S., Baxendale, C., Krainer, U., Bahn, M., Binet, M. - N., et al. (2016). Influence of plant traits, soil microbial properties, and abiotic parameters on nitrogen turnover of grassland ecosystems. Ecosphere, 7(11), n/a-n/a. doi:10.1002/ecs2.1448


  • Ma, W., Jiang, S., Assemien, F., Qin, M., Ma, B., Xie, Z., et al. (2016). Response of microbial functional groups involved in soil N cycle to N, P and NP fertilization in Tibetan alpine meadows. Soil Biology And Biochemistry, 101, 195-206. doi:10.1016/j.soilbio.2016.07.023


  • Niklaus, P. A., Le Roux, X., Poly, F., Buchmann, N., Scherer-Lorenzen, M., Weigelt, A., & Barnard, R. L. (2016). Plant species diversity affects soil–atmosphere fluxes of methane and nitrous oxide. Oecologia, 1-12. doi:10.1007/s00442-016-3611-8

  • Richaume, A. (2016, January 15). Écotoxicité et écodynamique des nanoparticules d’oxydes métalliques dans les sols. Retrieved from http://www.envitera.com/docc/ENVIRHONALP-Interview-RICHAUME-JOLION.pdf

  • Rozier, C., Erban, A., Hamzaoui, J., Prigent-Combaret, C., Comte, G., Kopka, J., et al. (2016). Xylem Sap Metabolite Profile Changes During Phytostimulation of Maize by the Plant Growth-Promoting Rhizobacterium, Azospirillum lipoferum CRT1. Metabolomics (Los Angel), 6(182), 2153–0769. Retrieved from https://www.researchgate.net/publication/308919302_Xylem_Sap_Metabolite_Profile_Changes_During_Phytostimulation_of_Maize_by_the_Plant_Growth-Promoting_Rhizobacterium_Azospirillum_lipoferum_CRT1


  • Simonin, M., Martins, J. M. F., Uzu, G., Vince, E., & Richaume, A. (2016). Combined Study of Titanium Dioxide Nanoparticle Transport and Toxicity on Microbial Nitrifying Communities under Single and Repeated Exposures in Soil Columns. Environmental Science & Technology, 50(19), 10693-10699. doi:10.1021/acs.est.6b02415


  • Simonin, M., Richaume, A., Guyonnet, J. P., Dubost, A., Martins, J. M. F., & Pommier, T. (2016). Titanium dioxide nanoparticles strongly impact soil microbial function by affecting archaeal nitrifiers. Scientific Reports, 6, 33643. doi:10.1038/srep33643

2015



  • Bardon, C., Piola, F., Haichar, F. Z., Meiffren, G., Comte, G., Misery, B., et al. (2015). Identification of B-type procyanidins in <i>Fallopia</i> spp. involved in biological denitrification inhibition (BDI): B-type procyanidins from Fallopia involved in BDI. Environmental Microbiology. doi:10.1111/1462-2920.13062
  • Bardon, C., Poly, F., Piola, F., Haichar, F. Z., & Comte, G. (2015). Utilisation de proanthocyanidines pour lutter contre la dénitrification.

0 | 50

 

Books (since 2006)

 

Abbadie L., Gignoux J., Le Roux X. & Lepage M. (Eds) 2006. Lamto : structure, functioning, and dynamics of a savanna ecosystem. Springer Verlag, Ecological Studies, 179, New York, 415 pp., (ISBN: 0-387-94844-9).

Le Roux X., Barbault R., Baudry J., Burel F., Doussan I., Garnier E., Herzog F., Lavorel S., Lifran R., Roger-Estrade J., Sarthou J.P. & Trometter M. (Eds) 2008. Agriculture et biodiversité : valoriser les synergies. Quae 184 pp.


Book chapters (since 2006)

 

Abbadie L., Gignoux J., Lepage M. & Le Roux X. 2006. Chapter 4 : Environnemental constraints on living organisms. In: "Lamto : structure, functioning, and dynamics of a savanna ecosystem." (Abbadie L., Gignoux J., Le Roux X. & Lepage M. Eds), Springer Verlag, Ecological Studies, 179, New York, 45-61.

Gignoux J., Le Roux X. & Abbadie L. 2006. Chapter 21 : Perspectives: from the Lamto experience to critical issues for savanna ecology research. In: "Lamto : structure, functioning, and dynamics of a savanna ecosystem." (Abbadie L., Gignoux J., Le Roux X. & Lepage M. Eds), Springer Verlag, Ecological Studies, 179, New York, 392-407.

Le Roux X. 2006. Chapter 3 : Climate. In: "Lamto : structure, functioning, and dynamics of a savanna ecosystem." (Abbadie L., Gignoux J., Le Roux X. & Lepage M. Eds), Springer Verlag, Ecological Studies, 179, New York, 25-44.

Le Roux X. & Monteny B. 2006. Chapter 6 : Soil-plant-atmosphere exchanges. In: "Lamto : structure, functioning, and dynamics of a savanna ecosystem." (Abbadie L., Gignoux J., Le Roux X. & Lepage M. Eds), Springer Verlag, Ecological Studies, 179, New York, 77-113.

Le Roux X., Gignoux J. & Simioni G. 2006. Chapter 9 : Modelling the relationships between vegetation structure and functioning, and modeling savanna functioning from plot to region. In: "Lamto : structure, functioning, and dynamics of a savanna ecosystem." (Abbadie L., Gignoux J., Le Roux X. & Lepage M. Eds), Springer Verlag, Ecological Studies, 179, New York, 163-183.

Le Roux X., Abbadie L., Fritz H. & Leriche H. 2006. Chapter 10 : Modification of the savanna functioning by herbivores. In: "Lamto : structure, functioning, and dynamics of a savanna ecosystem." (Abbadie L., Gignoux J., Le Roux X. & Lepage M. Eds), Springer Verlag, Ecological Studies, 179, New York, 185-198.

Le Roux X., Abbadie L. & Gignoux J. 2006. Chapter 20 : A synthetic overview of Lamto savanna ecology : importance of structure-functioning-dynamics relationships. In: "Lamto : structure, functioning, and dynamics of a savanna ecosystem." (Abbadie L., Gignoux J., Le Roux X. & Lepage M. Eds), Springer Verlag, Ecological Studies, 179, New York, 382-392.

Mordelet P. & Le Roux X. 2006. Chapter 8 : Tree/grass interactions. In: "Lamto : structure, functioning, and dynamics of a savanna ecosystem." (Abbadie L., Gignoux J., Le Roux X. & Lepage M. Eds), Springer Verlag, Ecological Studies, 179, New York, 139-161.

Le Roux X. 2009. Agriculture et biodiversité : quels grands enjeux pour demain ? in: Humanité et biodiversité: manifeste pour une nouvelle alliance. Descartes & Cie. 177-182.

Le Roux X. 2010. Le sol: un gigantesque réservoir de biodiversité. In: Aux origines de l’environnement. (Gouyon P.H. & Leriche H. Eds), Fayard, Paris, 130-143.

Bertrand J.C., Bonin P., Caumette P., Gattuso J.P., Grégori G., Guyoneaud R., Le Roux X., Matteron R. & Poly F. 2011. Les cycles biogéochimiques. In: "Ecologie microbienne: Microbiologie des milieux naturels et anthropisés." (Bertrand J.C., Caumette, Lebaron P., Matheron R. & Normand P. Eds), PUP, Pau, 545-657.

Le Roux X., Recous S. & Attard E. 2011. Soil microbial diversity in grasslands, and its importance for grassland functioning and services.in: Lemaire G. & Chabbi A. (Eds). Grassland Productivity and Ecosystem Services. CABI International, 158-165.

Normand P, Duran R, Le Roux X. Morris CE. & Poggiale J.C. 2011. Biodiversité et fonctionnement des écosystèmes microbiens. In: "Ecologie microbienne: Microbiologie des milieux naturels et anthropisés." (Bertrand J.C., Caumette P., Lebaron P., Matheron R., & Normand P. Eds), PUP, Pau pp. 263-296.

Larigauderie A., Le Roux X., Gauthier C.A., Leadley P.W. 2012. Vers une gouvernance internationale liant science et société. In: Prevost-Juillard A. Ed, Fayard (in press)

 

National or international reports and popular articles:

 

National and international report since (2006) :

 

Silvain J.F., Le Roux X., Babin D., Barbault R., Bertin P., Bodo B., Boude J.P., Boudry P., Bourgoin T., Boyen C., Cormier-Salem M.C., Courchamp F., Couvet D., David B., Delay B., Doussan I., Jaskulke E., Lavorel S., Leadley P., Lefèvre F., Leriche H., Letourneux F., Los W., Mesleard F., Morand S., Schmidt-Lainé C., Siclet F. & Verrier E. 2009. Prospective pour la recherche française sur la biodiversité, FRB, 96 pp.

Chaveriat C., Ghitalla F., Pelegrin F., Fadil F. & Le Roux X. 2011. La base de données nationale des acteurs, structures et projets de recherche sur la biodiversité : présentation et analyse du paysage de la recherche. In: Expertise et synthèse FRB, 36 pp.

Mattei S., Henkel L., Gauthier C.A. & Le Roux X. 2011. Biodiversity within the ’Environment’ theme of the 7th framework programme (2007-2010): funding amounts, success rates, temporal trends & comparison between countries. In: Expertise and synthesis, FRB, 32 pp.

 

Popular articles (since 2006) :

 

Lemanceau P., Le Roux X. & Martin F. 2006. L’écologie microbienne des sols : un domaine scientifique en plein développement pour une meilleure gestion de notre environnement. Biofutur 268: 22-23.

Le Roux X., Philippot L., Degrange V., Poly F. & Wertz S. 2006. Relations entre biodiversité et fonctionnement chez les communautés microbiennes. Biofutur 268: 50-53.

Le Roux X. 2009. Les liens entre agriculture et biodiversité auscultés par la communauté scientifique. Revue des oenologues, 132: 1-2.

Le Roux X. 2009. Agriculture et biodiversité. Revue du club parlementaire sur l’avenir de la recherche agronomique. AGORA, avril 2009: 1-4.

Le Roux X. 2010. Agriculture en quête de nature. Campagnes et Environnement 11: 16-18.

Le Roux X. & Gauthier C.A. 2011. Gouvernance mondiale de la biodiversité: naissance de l’IPBES. In: Entreprises, relevez le défi de la biodiversité (Pays L. & Frémaux P. Ed) Victoires éditions, 132-135.

 

Movies and other medias (since 2006) :

 

Movies :

2008: Film INRA “agriculture-biodiversité” (participation de X Le Roux)

2010: Film “La biodiversité, c’est aussi près de chez vous” - C. Production Chromatiques / CAP CANAL (participation de X Le Roux) :

http://www.capcanal.tv/video.php?rubrique=5&emission=4&key=kuxy8TGdEV

2009: Film de la présentation des résultats de l’expertise scientifique collective “Agriculture & biodiversité” par X. Le Roux devant le Pôle “Activités rurales, agricultures et territoires en Rhône-Alpes’ :

http://www.psdr-ra.fr/spip.php?rubrique44

2012: Film “Dessine-moi un paysage bio”, Ministère de l’Agriculture & Bergerie nationale (participation de X Le Roux) : http://www.dailymotion.com/video/xo2vne_dessine-moi-un-paysage-bio-version-courte_webcam?ralg=behavior-meta2#from=playrelon-2

 

Others:

Le Roux X. 2008. Interview sur le thème ‘Agriculture et biodiversité’ par la radio RFI

Le Roux X. 2008. Interview sur le thème ‘Agriculture et biodiversité’ dans le journal Le Monde.

Le Roux X. 2010. Interview sur la biodiversité dans le journal Libération.