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Accueil > Productions scientifiques > Année 2019

Année 2019

Articles à comité de lecture

  • Mazuy-Cruchaudet, C., Granjon, A., Félix, S., Donguy, M.-P., Lattard, G., Itié-Hafez, S., Loukiadis, E., Sergentet-Thevenot, D., 2019. Surveillance des E. coli producteurs de shigatoxines (STEC) dans les viandes hachées de bœuf réfrigérées et surgelées mises sur le marché en France en 2016. RIAL 21.


  • Pizzorno, A., Terrier, O., Nicolas de Lamballerie, C., Julien, T., Padey, B., Traversier, A., Roche, M., Hamelin, M.-E., Rhéaume, C., Croze, S., Escuret, V., Poissy, J., Lina, B., Legras-Lachuer, C., Textoris, J., Boivin, G., Rosa-Calatrava, M., 2019. Repurposing of Drugs as Novel Influenza Inhibitors From Clinical Gene Expression Infection Signatures. Frontiers in Immunology 10, 60. https://doi.org/10.3389/fimmu.2019.00060


  • Nicolas de Lamballerie, C., Pizzorno, A., Dubois, J., Julien, T., Padey, B., Bouveret, M., Traversier, A., Legras-Lachuer, C., Lina, B., Boivin, G., Terrier, O., Rosa-Calatrava, M., 2019. Characterization of cellular transcriptomic signatures induced by different respiratory viruses in human reconstituted airway epithelia. Scientific Reports 9, 11493. https://doi.org/10.1038/s41598-019-48013-7


  • Mateo, M., Reynard, S., Carnec, X., Journeaux, A., Baillet, N., Schaeffer, J., Picard, C., Legras-Lachuer, C., Allan, R., Perthame, E., Hillion, K.-H., Pietrosemoli, N., Dillies, M.-A., Barrot, L., Vallve, A., Barron, S., Fellmann, L., Gaillard, J.-C., Armengaud, J., Carbonnelle, C., Raoul, H., Tangy, F., Baize, S., 2019. Vaccines inducing immunity to Lassa virus glycoprotein and nucleoprotein protect macaques after a single shot. Science Translational Medicine 11, eaaw3163. https://doi.org/10.1126/scitranslmed.aaw3163


  • Thakur, B., Yadav, R., Vallon, L., Marmeisse, R., Fraissinet-Tachet, L., Sudhakara Reddy, M., 2019. Multi-metal tolerance of von Willebrand factor type D domain isolated from metal contaminated site by metatranscriptomics approach. Science of The Total Environment 661, 432-440. https://doi.org/10.1016/j.scitotenv.2019.01.201


  • Mukherjee, A., Yadav, R., Marmeisse, R., Fraissinet-Tachet, L., Reddy, M.S., 2019. Heavy metal hypertolerant eukaryotic aldehyde dehydrogenase isolated from metal contaminated soil by metatranscriptomics approach. Biochimie 160, 183-192. https://doi.org/10.1016/j.biochi.2019.03.010


  • Li, M., Wei, Z., Wang, J., Jousset, A., Friman, V.‐P., Xu, Y., Shen, Q., Pommier, T., 2019. Facilitation promotes invasions in plant‐associated microbial communities. Ecology Letters 22, 149-158. https://doi.org/10.1111/ele.13177


  • Ciampa, A., Dell'Abate, M.T., Florio, A., Tarricone, L., Di Gennaro, D., Picone, G., Trimigno, A., Capozzi, F., Benedetti, A., 2019. Combined magnetic resonance imaging and high resolution spectroscopy approaches to study the fertilization effects on metabolome, morphology and yeast community of wine grape berries, cultivar Nero di Troia. Food Chemistry 274, 831-839. https://doi.org/10.1016/j.foodchem.2018.09.056


  • Rozier, C., Gerin, F., Czarnes, S., Legendre, L., 2019. Biopriming of maize germination by the plant growth-promoting rhizobacterium Azospirillum lipoferum CRT1. Journal of Plant Physiology 237, 111-119. https://doi.org/10.1016/j.jplph.2019.04.011


  • Maaloul, A., Sancho, M.V.E.R.D.E.G.U.E.R., Oddo, M., Saadaoui, E., Jebri, M., Michalet, S., Dijoux Franca, M.G., Mars, M., Romdhane, M., 2019. Effect of Short and Long Term Irrigation with Treated Wastewater on Chemical Composition and Herbicidal Activity of Eucalyptus camaldulensis Dehn. Essential Oils. Notulae Botanicae Horti Agrobotanici Cluj-Napoca 47, 1374-1381. https://doi.org/10.15835/nbha47411374


  • Yang, S., Zheng, Q., Yuan, M., Shi, Z., Chiariello, N.R., Docherty, K.M., Dong, S., Field, C.B., Gu, Y., Gutknecht, J., Hungate, B.A., Le Roux, X., Ma, X., Niboyet, A., Yuan, T., Zhou, J., Yang, Y., 2019. Long-term elevated CO2 shifts composition of soil microbial communities in a Californian annual grassland, reducing growth and N utilization potentials. Science of The Total Environment 652, 1474-1481. https://doi.org/10.1016/j.scitotenv.2018.10.353


  • Sutherland, W.J., Broad, S., Butchart, S.H.M., Clarke, S.J., Collins, A.M., Dicks, L.V., Doran, H., Esmail, N., Fleishman, E., Frost, N., Gaston, K.J., Gibbons, D.W., Hughes, A.C., Jiang, Z., Kelman, R., LeAnstey, B., le Roux, X., Lickorish, F.A., Monk, K.A., Mortimer, D., Pearce-Higgins, J.W., Peck, L.S., Pettorelli, N., Pretty, J., Seymour, C.L., Spalding, M.D., Wentworth, J., Ockendon, N., 2019. A Horizon Scan of Emerging Issues for Global Conservation in 2019. Trends in Ecology & Evolution 34, 83-94. https://doi.org/10.1016/j.tree.2018.11.001


  • Shi, Y., Wang, J., Le Roux, X., Mu, C., Ao, Y., Gao, S., Zhang, J., Knops, J.M.H., 2019. Trade-offs and synergies between seed yield, forage yield, and N-related disservices for a semi-arid perennial grassland under different nitrogen fertilization strategies. Biology and Fertility of Soils 55, 497-509. https://doi.org/10.1007/s00374-019-01367-6


  • Assémien, F.L., Cantarel, A.A.M., Florio, A., Lerondelle, C., Pommier, T., Gonnety, J.T., Le Roux, X., 2019. Different groups of nitrite-reducers and N2O-reducers have distinct ecological niches and functional roles in West African cultivated soils. Soil Biology and Biochemistry 129, 39-47. https://doi.org/10.1016/j.soilbio.2018.11.003

  • Vial, L., Hommais, F., 2019. Plasmid-chromosome crosstalks. Environmental Microbiology. https://doi.org/10.1111/1462-2920.14880


  • Durand, T., Vautrin, F., Bergeron, E., Girard, V., Polsinelli, S., Monnin, V., Durand, G., Dauwalder, O., Dumitrescu, O., Laurent, F., Rodríguez-Nava, V., 2019. Assessment of VITEK® MS IVD database V3.0 for identification of Nocardia spp. using two culture media and comparing direct smear and protein extraction procedures. European Journal of Clinical Microbiology & Infectious Diseases. https://doi.org/10.1007/s10096-019-03758-x


  • Aremu, B.R., Prigent-Combaret, C., Babalola, O.O., 2019. Draft Genome Sequence of <i>Bacillus velezensis</i> Strain ZeaDK315Endo16. Microbiology Resource Announcements 8, e00136-19, /mra/8/46/MRA.00136-19.atom. https://doi.org/10.1128/MRA.00136-19


  • Habbadi, K., Duplay, Q., Chapulliot, D., Kerzaon, I., Benkirane, R., Benbouazza, A., Wisniewski-Dyé, F., Lavire, C., Achbani, E.H., Vial, L., 2019. Characterization and phylogenetic diversity of Allorhizobium vitis isolated from grapevine in Morocco. Journal of Applied Microbiology. https://doi.org/10.1111/jam.14523


  • Miotto-Vilanova, L., Courteaux, B., Padilla, R., Rabenoelina, F., Jacquard, C., Clément, C., Comte, G., Lavire, C., Ait Barka, E., Kerzaon, I., Sanchez, L., 2019. Impact of Paraburkholderia phytofirmans PsJN on Grapevine Phenolic Metabolism. International Journal of Molecular Sciences 20, 5775. https://doi.org/10.3390/ijms20225775


  • de Lajudie, P.M., Andrews, M., Ardley, J., Eardly, B., Jumas-Bilak, E., Kuzmanović, N., Lassalle, F., Lindström, K., Mhamdi, R., Martínez-Romero, E., Moulin, L., Mousavi, S.A., Nesme, X., Peix, A., Puławska, J., Steenkamp, E., Stępkowski, T., Tian, C.-F., Vinuesa, P., Wei, G., Willems, A., Zilli, J., Young, P., 2019. Minimal standards for the description of new genera and species of rhizobia and agrobacteria. International Journal of Systematic and Evolutionary Microbiology 69, 1852-1863. https://doi.org/10.1099/ijsem.0.003426


  • Rondeau, M., Esmaeel, Q., Crouzet, J., Blin, P., Gosselin, I., Sarazin, C., Pernes, M., Beaugrand, J., Wisniewski-Dyé, F., Vial, L., Faure, D., Clément, C., Barka, E.A., Jacquard, C., Sanchez, L., 2019. Biofilm-Constructing Variants of Paraburkholderia phytofirmans PsJN Outcompete the Wild-Type Form in Free-Living and Static Conditions but Not In Planta. Applied and Environmental Microbiology 85. https://doi.org/10.1128/AEM.02670-18


  • Marty, L., Vigouroux, A., Aumont-Nicaise, M., Pelissier, F., Meyer, T., Lavire, C., Dessaux, Y., Moréra, S., 2019. Structural basis for two efficient modes of agropinic acid opine import into the bacterial pathogen Agrobacterium tumefaciens. Biochemical Journal 476, 165-178. https://doi.org/10.1042/BCJ20180861


  • Fabiańska, I., Gerlach, N., Almario, J., Bucher, M., 2019. Plant‐mediated effects of soil phosphorus on the root‐associated fungal microbiota in <i>Arabidopsis thaliana</i>. New Phytologist 221, 2123-2137. https://doi.org/10.1111/nph.15538


  • Xue, L., Almario, J., Fabiańska, I., Saridis, G., Bucher, M., 2019. Dysfunction in the arbuscular mycorrhizal symbiosis has consistent but small effects on the establishment of the fungal microbiota in <i>Lotus japonicus</i>. New Phytologist 224, 409-420. https://doi.org/10.1111/nph.15958


  • Kopecky, J., Samkova, Z., Sarikhani, E., Kyselková, M., Omelka, M., Kristufek, V., Divis, J., Grundmann, G., Moënne-Loccoz, Y., Sagova-Mareckova, M., 2019. Bacterial, archaeal and micro-eukaryotic communities characterize a disease-suppressive or conducive soil and a cultivar resistant or susceptible to common scab. Scientific Reports 9, 14883. https://doi.org/10.1038/s41598-019-51570-6


  • Selak, G.V., Raboteg, M., Dubost, A., Abrouk, D., Žanić, K., Normand, P., Pujić, P., 2019. Whole-Genome Sequence of a Pantoea sp. Strain Isolated from an Olive (Olea europaea L.) Knot. Microbiology Resource Announcements 8. https://doi.org/10.1128/MRA.00978-19


  • Yang, S., Zheng, Q., Yang, Y., Yuan, M., Ma, X., Chiariello, N.R., Docherty, K.M., Field, C.B., Gutknecht, J.L.M., Hungate, B.A., Niboyet, A., Le Roux, X., Zhou, J., 2019. Fire affects the taxonomic and functional composition of soil microbial communities, with cascading effects on grassland ecosystem functioning. Global Change Biology gcb.14852. https://doi.org/10.1111/gcb.14852


  • Bethencourt, L., Vautrin, F., Taib, N., Dubost, A., Castro-Garcia, L., Imbaud, O., Abrouk, D., Fournier, P., Briolay, J., Nguyen, A., Normand, P., Fernandez, M.P., Brochier-Armanet, C., Herrera-Belaroussi, A., 2019. Draft genome sequences for three unisolated <i>Alnus</i> -infective <i>Frankia</i> Sp+ strains, AgTrS, AiOr and AvVan, the first sequenced <i>Frankia</i> strains able to sporulate <i>in-planta</i>. Journal of Genomics 7, 50-55. https://doi.org/10.7150/jgen.35875


  • Eymery, M., Morfin, F., Doleans-Jordheim, A., Perceval, M., Ohlmann, C., Mainguy, C., Reix, P., 2019. Viral respiratory tract infections in young children with cystic fibrosis: a prospective full-year seasonal study. Virology Journal 16, 111. https://doi.org/10.1186/s12985-019-1208-7

  • Michalet, S., Minard, G., Chevalier, W., Meiffren, G., Saucereau, Y., Tran Van, V., Comte, G., Tran, F.H., Valiente Moro, C., 2019. Identification of human skin bacteria attractive to the Asian Tiger mosquito. Environmental Microbiology 21, 4662-4674. https://doi.org/10.1111/1462-2920.14793


  • Minard, G., Tikhonov, G., Ovaskainen, O., Saastamoinen, M., 2019. The microbiome of the Melitaea cinxia butterfly shows marked variation but is only little explained by the traits of the butterfly or its host plant. Environmental Microbiology 21, 4253-4269. https://doi.org/10.1111/1462-2920.14786


  • Meyer, T., Thiour-Mauprivez, C., Wisniewski-Dyé, F., Kerzaon, I., Comte, G., Vial, L., Lavire, C., 2019. Ecological Conditions and Molecular Determinants Involved in Agrobacterium Lifestyle in Tumors. Frontiers in Plant Science 10, 978. https://doi.org/10.3389/fpls.2019.00978


  • Florio, A., Bréfort, C., Gervaix, J., Bérard, A., Le Roux, X., 2019. The responses of NO2−- and N2O-reducing bacteria to maize inoculation by the PGPR Azospirillum lipoferum CRT1 depend on carbon availability and determine soil gross and net N2O production. Soil Biology and Biochemistry 136, 107524. https://doi.org/10.1016/j.soilbio.2019.107524


  • Galland, W., Piola, F., Burlet, A., Mathieu, C., Nardy, M., Poussineau, S., Blazère, L., Gervaix, J., Puijalon, S., Simon, L., Haichar, F.Z., 2019. Biological denitrification inhibition (BDI) in the field: A strategy to improve plant nutrition and growth. Soil Biology and Biochemistry 136, 107513. https://doi.org/10.1016/j.soilbio.2019.06.009


  • Akanny, E., Bonhommé, A., Commun, C., Doleans-Jordheim, A., Bessueille, F., Bourgeois, S., Bordes, C., 2019. Development of uncoated near-spherical gold nanoparticles for the label-free quantification of Lactobacillus rhamnosus GG by surface-enhanced Raman spectroscopy. Analytical and Bioanalytical Chemistry 411, 5563-5576. https://doi.org/10.1007/s00216-019-01938-4


  • Alonso, L., Pommier, T., Kaufmann, B., Dubost, A., Chapulliot, D., Doré, J., Douady, C.J., Moënne‐Loccoz, Y., 2019. Anthropization level of Lascaux Cave microbiome shown by regional-scale comparisons of pristine and anthropized caves. Molecular Ecology 28, 3383-3394. https://doi.org/10.1111/mec.15144


  • Diel, B., Dequivre, M., Wisniewski‐Dyé, F., Vial, L., Hommais, F., 2019. A novel plasmid-transcribed regulatory sRNA, QfsR, controls chromosomal polycistronic gene expression in Agrobacterium fabrum. Environmental Microbiology 21, 3063-3075. https://doi.org/10.1111/1462-2920.14704


  • Gasmi, M., Kitouni, M., Carro, L., Pujic, P., Normand, P., Boubakri, H., 2019. Chitinolytic actinobacteria isolated from an Algerian semi-arid soil: development of an antifungal chitinase-dependent assay and GH18 chitinase gene identification. Annals of Microbiology 69, 395-405. https://doi.org/10.1007/s13213-018-1426-z


  • Theillet, G., Grard, G., Galla, M., Maisse, C., Enguehard, M., Cresson, M., Dalbon, P., Leparc‐Goffart, I.L., Bedin, F., 2019. Detection of chikungunya virus-specific IgM on laser-cut paper-based device using pseudo-particles as capture antigen. Journal of Medical Virology 91, 899-910. https://doi.org/10.1002/jmv.25420


  • Bernard, C., Escalas, A., Villeriot, N., Agogué, H., Hugoni, M., Duval, C., Carré, C., Got, P., Sarazin, G., Jézéquel, D., Leboulanger, C., Grossi, V., Ader, M., Troussellier, M., 2019. Very Low Phytoplankton Diversity in a Tropical Saline-Alkaline Lake, with Co-dominance of Arthrospira fusiformis (Cyanobacteria) and Picocystis salinarum (Chlorophyta). Microbial Ecology. https://doi.org/10.1007/s00248-019-01332-8


  • Gomard, Y., Lagadec, E., Humeau, L., Pinet, P., Bureau, S., Da Silva, D., Turpin, M., Soulaimana Mattoir, Y., Georger, S., Mavingui, P., Tortosa, P., 2019. Feral cats do not play a major role in leptospirosis epidemiology on Reunion Island. Epidemiology and Infection 147. https://doi.org/10.1017/S0950268819000190


  • Rosa, E., Minard, G., Lindholm, J., Saastamoinen, M., 2019. Moderate plant water stress improves larval development, and impacts immunity and gut microbiota of a specialist herbivore. PLOS ONE 14, e0204292. https://doi.org/10.1371/journal.pone.0204292


  • Lepère, C., Domaizon, I., Humbert, J.-F., Jardillier, L., Hugoni, M., Debroas, D., 2019. Diversity, spatial distribution and activity of fungi in freshwater ecosystems. PeerJ 7, e6247. https://doi.org/10.7717/peerj.6247


  • Luis, P., Saint‐Genis, G., Vallon, L., Bourgeois, C., Bruto, M., Marchand, C., Record, E., Hugoni, M., 2019. Contrasted ecological niches shape fungal and prokaryotic community structure in mangroves sediments. Environmental Microbiology 21, 1407-1424. https://doi.org/10.1111/1462-2920.14571


  • Alori, E.T., Babalola, O.O., Prigent-Combaret, C., 2019. Impacts of Microbial Inoculants on the Growth and Yield of Maize Plant. The Open Agriculture Journal 13. https://doi.org/10.2174/1874331501913010001


  • Luis, P., Vallon, L., Tran, F.H., Hugoni, M., Tran Van, V., Mavingui, P., Minard, G., Valiente Moro, C., 2019. Aedes albopictus mosquitoes host a locally structured mycobiota with evidence of reduced fungal diversity in invasive populations. Fungal Ecology 39, 257-266. https://doi.org/10.1016/j.funeco.2019.02.004


  • Valette, M., Rey, M., Gerin, F., Comte, G., Wisniewski-Dyé, F., 2019. A common metabolomic signature is observed upon inoculation of rice roots with various rhizobacteria. Journal of Integrative Plant Biology. https://doi.org/10.1111/jipb.12810


  • Pujic, P., Alloisio, N., Fournier, P., Roche, D., Sghaier, H., Miotello, G., Armengaud, J., Berry, A.M., Normand, P., 2019. Omics of the early molecular dialogue between <i>Frankia alni</i> and <i>Alnus glutinosa</i> and the cellulase synton. Environmental Microbiology. https://doi.org/10.1111/1462-2920.14606


  • Ma, B., Zhou, X., Zhang, Q., Qin, M., Hu, L., Yang, K., Xie, Z., Ma, W., Chen, B., Feng, H., Liu, Y., Du, G., Ma, X., Le Roux, X., 2019. How do soil micro-organisms respond to N, P and NP additions? Application of the ecological framework of (co-)limitation by multiple resources. Journal of Ecology. https://doi.org/10.1111/1365-2745.13179


  • Béthencourt, L., Boubakri, H., Taib, N., Normand, P., Armengaud, J., Fournier, P., Brochier-Armanet, C., Herrera-Belaroussi, A., 2019. Comparative genomics and proteogenomics highlight key molecular players involved in Frankia sporulation. Research in Microbiology. https://doi.org/10.1016/j.resmic.2019.04.002

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Livres


  • Faure, D., Joly, D., Salamitou, S., 2019. 101 secrets de l'ADN.

Chapitres de livre



  • Achouak, W., Haichar, F.Z., 2019. Stable Isotope Probing of Microbiota Structure and Function in the Plant Rhizosphere, dans: Dumont, M.G., Hernández García, M. (Éd.), Stable Isotope Probing: Methods And Protocols, Methods In Molecular Biology. Springer, New York, NY, p. 233-243.