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Articles à comité de lecture

  • Lecomte, V., Bertrand-Krajewski, B., Bouchez, A., Cournoyer, B., Dagot, C., Gonzalez-Ospina, A., Labanowski, J., Levi, Y., Perrodin, Y., Wiest, L., 2018. SIPIBEL: a pilot site for studying hospital and urban sewage. Key lessons from five years of monitoring and research. Environnement Risques Santé 17, 59-74.

  • Boccoz, S.A., Fouret, J., Roche, M., Lachuer, J., Legras-Lachuer, C., Corgier, B.P., Marquette, C.A., 2018. Massively parallel and multiplex blood group genotyping using next-generation-sequencing. Clinical Biochemistry 60, 71-76.

  • Thakur, B., Yadav, R., Fraissinet-Tachet, L., Marmeisse, R., Sudhakara Reddy, M., 2018. Isolation of multi-metal tolerant ubiquitin fusion protein from metal polluted soil by metatranscriptomic approach. Journal of Microbiological Methods 152, 119-125.

  • Meyer, T., Vigouroux, A., Aumont-Nicaise, M., Comte, G., Vial, L., Lavire, C., Moréra, S., 2018. The plant defense signal galactinol is specifically used as a nutrient by the bacterial pathogen <i>Agrobacterium fabrum</i>. Journal of Biological Chemistry 293, 7930-7941.

  • Kuzmanović, N., Puławska, J., Smalla, K., Nesme, X., 2018. Agrobacterium rosae sp. nov., isolated from galls on different agricultural crops. Systematic and Applied Microbiology 41, 191-197.

  • Karasov, T.L., Almario, J., Friedemann, C., Ding, W., Giolai, M., Heavens, D., Kersten, S., Lundberg, D.S., Neumann, M., Regalado, J., Neher, R.A., Kemen, E., Weigel, D., 2018. Arabidopsis thaliana and Pseudomonas Pathogens Exhibit Stable Associations over Evolutionary Timescales. Cell Host & Microbe 24, 168-179.e4.

  • Doussan, C., Bérard, A., Czarnes, S., Legendre, L., Legouis, J., Ruy, S., Guix, N., 2018. Do Plant Roots Modify The Soil Water Retention Properties of Rhizospheric Soil ? Evidences from the field and controlled conditions. AGU Fall Meeting Abstracts 23.

  • Guyonnet, J.P., Guillemet, M., Dubost, A., Simon, L., Ortet, P., Barakat, M., Heulin, T., Achouak, W., Haichar, F.Z., 2018. Plant Nutrient Resource Use Strategies Shape Active Rhizosphere Microbiota Through Root Exudation. Frontiers in Plant Science 9.

  • Lecomte, S.M., Achouak, W., Abrouk, D., Heulin, T., Nesme, X., Haichar, F.Z., 2018. Diversifying Anaerobic Respiration Strategies to Compete in the Rhizosphere. Frontiers in Environmental Science 6.

  • Simonin, M., Cantarel, A.A.M., Crouzet, A., Gervaix, J., Martins, J.M.F., Richaume, A., 2018. Negative Effects of Copper Oxide Nanoparticles on Carbon and Nitrogen Cycle Microbial Activities in Contrasting Agricultural Soils and in Presence of Plants. Frontiers in Microbiology 9.

  • Alonso, L., Creuzé des Châtelliers, C., Trabac, T., Dubost, A., Moënne-Loccoz, Y., Pommier, T., 2018. Rock substrate rather than black stain alterations drives microbial community structure in the passage of Lascaux Cave. Microbiome 6, 216.

  • Hugoni, M., Escalas, A., Bernard, C., Nicolas, S., Jézéquel, D., Vazzoler, F., Sarazin, G., Leboulanger, C., Bouvy, M., Got, P., Ader, M., Troussellier, M., Agogué, H., 2018. Spatiotemporal variations in microbial diversity across the three domains of life in a tropical thalassohaline lake (Dziani Dzaha, Mayotte Island). Molecular Ecology.

  • Chiapusio, G., Jassey, V.E.J., Bellvert, F., Comte, G., Weston, L.A., Delarue, F., Buttler, A., Toussaint, M.L., Binet, P., 2018. Sphagnum Species Modulate their Phenolic Profiles and Mycorrhizal Colonization of Surrounding Andromeda polifolia along Peatland Microhabitats. Journal of Chemical Ecology.

  • Ibrahim, N.A.G.A.A., Omar, M.N.A.M., El Heba, G.A.A., Moënne-Loccoz, Y., Prigent-Combaret, C., Muller, D., 2018. Draft Genome Sequence of Plant Growth-Promoting <i>Bacillus altitudinis</i> Strain PAE4. Microbiology Resource Announcements 7.

  • Lipeme Kouyi, G., Barraud, S., Becouze-Lareure, C., Blaha, D., Perrodin, Y., Wiest, L., Aubin, J.-B., Toussaint, J.-Y., Vareilles, S., Mandon, C., Bernardin-Souibgui, C., Marti, R., Bourgeois, É., Marjolet, L., Cournoyer, B., 2018. Caractérisation des sédiments d’un bassin de retenue-décantation des eaux pluviales et éléments pour la gestion. Techniques Sciences Méthodes 65-75.

  • Bertrand, C., Prigent-Combaret, C., Gonzales-Coloma, A., 2018. Chemistry, activity, and impact of plant biocontrol products. Environmental Science and Pollution Research.

  • Guyonnet, J.P., Cantarel, A.A.M., Simon, L., Haichar, F.Z., 2018. Root exudation rate as functional trait involved in plant nutrient-use strategy classification. Ecology and Evolution 8, 8573-8581.

  • Roussel, C., Galia, W., Leriche, F., Chalancon, S., Denis, S., Van de Wiele, T., Blanquet-Diot, S., 2018. Comparison of conventional plating, PMA-qPCR, and flow cytometry for the determination of viable enterotoxigenic Escherichia coli along a gastrointestinal in vitro model. Applied Microbiology and Biotechnology.

  • Schwob, G., Roy, M., Pozzi, C.A., Herrera-Belaroussi, A., Fernandez, M.P., 2018. <i>In planta</i> sporulation of <i>Frankia</i> as a determinant of alder-symbionts interactions. Applied and Environmental Microbiology.

  • Normand, P., Nouioui, I., Pujic, P., Fournier, P., Dubost, A., Schwob, G., Klenk, H.-P., Nguyen, A., Abrouk, D., Herrera-Belaroussi, A., Pothier, J.F., Pflüger, V., Fernandez, M.P., 2018. Frankia canadensis sp. nov., isolated from root nodules of Alnus incana subspecies rugosa. International Journal of Systematic and Evolutionary Microbiology 68, 3001-3011.

  • Lurthy, T., Alloisio, N., Fournier, P., Anchisi, S., Ponsero, A., Normand, P., Pujic, P., Boubakri, H., 2018. Molecular response to nitrogen starvation by Frankia alni ACN14a revealed by transcriptomics and functional analysis with a fosmid library in Escherichia coli. Research in Microbiology 169, 90-100.

  • Myronovskyi, M., Rosenkränzer, B., Nadmid, S., Pujic, P., Normand, P., Luzhetskyy, A., 2018. Generation of a cluster-free Streptomyces albus chassis strains for improved heterologous expression of secondary metabolite clusters. Metabolic Engineering 49, 316-324.

  • Lavergne, C., Hugoni, M., Dupuy, C., Agogué, H., 2018. First evidence of the presence and activity of archaeal C3 group members in an Atlantic intertidal mudflat. Scientific Reports 8, 11790.

  • Le, H.T., Rochelle-Newall, E., Auda, Y., Ribolzi, O., Sengtaheuanghoung, O., Thébault, E., Soulileuth, B., Pommier, T., 2018. Vicinal land use change strongly drives stream bacterial community in a tropical montane catchment. FEMS Microbiology Ecology 94.

  • Hugoni, M., Luis, P., Guyonnet, J., Haichar, F.Z., 2018. Plant host habitat and root exudates shape fungal diversity. Mycorrhiza 28, 451-463.

  • Zidat, T., Dufour, A.-B., Meiffren, G., Gabirot, M., Comte, G., Allainé, D., 2018. Anal scent gland secretions inform on sexual maturity, sex and social status in the Alpine marmot, Marmota marmota (Rodentia: Sciuridae): a role in intrasexual competition in cooperative breeders? Biological Journal of the Linnean Society 125, 229-239.

  • Ziller, A., Fraissinet-Tachet, L., 2018. Metallothionein diversity and distribution in the tree of life: a multifunctional protein. Metallomics.

  • Guégan, M., Minard, G., Tran, F.H., Tran Van, V., Dubost, A., Valiente Moro, C., 2018. Short-term impacts of anthropogenic stressors on Aedes albopictus mosquito vector microbiota. FEMS Microbiology Ecology.

  • Bardon, C., Misery, B., Piola, F., Poly, F., Le Roux, X., 2018. Control of soil N cycle processes by <i>Pteridium aquilinum</i> and <i>Erica cinerea</i> in heathlands along a pH gradient. Ecosphere 9, e02426.

  • Crème, A., Rumpel, C., Le Roux, X., Romian, A., Lan, T., Chabbi, A., 2018. Ley grassland under temperate climate had a legacy effect on soil organic matter quantity, biogeochemical signature and microbial activities. Soil Biology and Biochemistry 122, 203-210.

  • Lebeaux, D., Bergeron, E., Berthet, J., Djadi-Prat, J., Mouniée, D., Boiron, P., Lortholary, O., Rodriguez-Nava, V., 2018. Antibiotic susceptibility testing and species identification of Nocardia isolates: a retrospective analysis of data from a French expert laboratory, 2010-2015. Clinical Microbiology and Infection.

  • Bernardin-Souibgui, C., Barraud, S., Bourgeois, E., Aubin, J.-B., Becouze-Lareure, C., Wiest, L., Marjolet, L., Colinon, C., Lipeme Kouyi, G., Cournoyer, B., Blaha, D., 2018. Incidence of hydrological, chemical, and physical constraints on bacterial pathogens, Nocardia cells, and fecal indicator bacteria trapped in an urban stormwater detention basin in Chassieu, France. Environmental Science and Pollution Research 25, 24860-24881.

  • Lloyd, N.A., Nazaret, S., Barkay, T., 2018. Whole genome sequences to assess the link between antibiotic and metal resistance in three coastal marine bacteria isolated from the mummichog gastrointestinal tract. Marine Pollution Bulletin 135, 514-520.

  • Jacquemond, I., Muggeo, A., Lamblin, G., Tristan, A., Gillet, Y., Bolze, P.A., Bes, M., Gustave, C.A., Rasigade, J.-P., Golfier, F., Ferry, T., Dubost, A., Abrouk, D., Barreto, S., Prigent-Combaret, C., Thioulouse, J., Lina, G., Muller, D., 2018. Complex ecological interactions of Staphylococcus aureus in tampons during menstruation. Scientific Reports 8, 9942.

  • Bouffaud, M.-L., Renoud, S., Dubost, A., Moënne-Loccoz, Y., Muller, D., 2018. 1-Aminocyclopropane-1-carboxylate deaminase producers associated to maize and other Poaceae species. Microbiome 6.

  • Nonfoux, L., Chiaruzzi, M., Badiou, C., Baude, J., Tristan, A., Thioulouse, J., Muller, D., Prigent-Combaret, C., Lina, G., 2018. Impact of Currently Marketed Tampons and Menstrual Cups on Staphylococcus aureus Growth and Toxic Shock Syndrome Toxin 1 Production In Vitro. Applied and Environmental Microbiology 84, e00351-18.

  • Riesco, R., Carro, L., Román-Ponce, B., Prieto, C., Blom, J., Klenk, H.-P., Normand, P., Trujillo, M.E., 2018. Defining the species Micromonospora saelicesensis and Micromonospora noduli under the framework of genomics. Frontiers in Microbiology 9.

  • Griesmann, M., Chang, Y., Liu, X., Song, Y., Haberer, G., Crook, M.B., Billault-Penneteau, B., Lauressergues, D., Keller, J., Imanishi, L., Roswanjaya, Y.P., Kohlen, W., Pujic, P., Battenberg, K., Alloisio, N., Liang, Y., Hilhorst, H., Salgado, M.G., Hocher, V., Gherbi, H., Svistoonoff, S., Doyle, J.J., He, S., Xu, Y., Xu, S., Qu, J., Gao, Q., Fang, X., Fu, Y., Normand, P., Berry, A.M., Wall, L.G., Ané, J.-M., Pawlowski, K., Xu, X., Yang, H., Spannagl, M., Mayer, K.F.X., Wong, G.K.-S., Parniske, M., Delaux, P.-M., Cheng, S., 2018. Phylogenomics reveals multiple losses of nitrogen-fixing root nodule symbiosis. Science (New York, N.Y.).

  • Voisin, J., Cournoyer, B., Vienney, A., Mermillod-Blondin, F., 2018. Aquifer recharge with stormwater runoff in urban areas: Influence of vadose zone thickness on nutrient and bacterial transfers from the surface of infiltration basins to groundwater. Science of The Total Environment 637-638, 1496-1507.

  • Gérard, E., De Goeyse, S., Hugoni, M., Agogué, H., Richard, L., Milesi, V., Guyot, F., Lecourt, L., Borensztajn, S., Joseph, M.-B., Leclerc, T., Sarazin, G., Jézéquel, D., Leboulanger, C., Ader, M., 2018. Key Role of Alphaproteobacteria and Cyanobacteria in the Formation of Stromatolites of Lake Dziani Dzaha (Mayotte, Western Indian Ocean). Frontiers in Microbiology 9, 796.

  • Pozzi, A.C., Bautista-Guerrero, H.H., Abby, S.S., Herrera-Belaroussi, A., Abrouk, D., Normand, P., Menu, F., Fernandez, M.P., 2018. Robust Frankia phylogeny, species delineation and intraspecies diversity based on Multi-Locus Sequence Analysis (MLSA) and Single-Locus Strain Typing (SLST) adapted to a large sample size. Systematic and Applied Microbiology.

  • Guégan, M., Zouache, K., Démichel, C., Minard, G., Tran Van, V., Potier, P., Mavingui, P., Valiente Moro, C., 2018. The mosquito holobiont: fresh insight into mosquito-microbiota interactions. Microbiome 6, 49.

  • Radix, S., Jordheim, A.D., Rocheblave, L., N'Digo, S., Prignon, A.-L., Commun, C., Michalet, S., Dijoux-Franca, M.-G., Mularoni, A., Walchshofer, N., 2018. N,N′ -disubstituted cinnamamide derivatives potentiate ciprofloxacin activity against overexpressing NorA efflux pump Staphylococcus aureus 1199B strains. European Journal of Medicinal Chemistry.

  • Douam, F., Fusil, F., Enguehard, M., Dib, L., Nadalin, F., Schwaller, L., Hrebikova, G., Mancip, J., Mailly, L., Montserret, R., Ding, Q., Maisse, C., Carlot, E., Xu, K., Verhoeyen, E., Baumert, T.F., Ploss, A., Carbone, A., Cosset, F.-L., Lavillette, D., 2018. A protein coevolution method uncovers critical features of the Hepatitis C Virus fusion mechanism. PLOS Pathogens 14, e1006908.

  • Tetreau, G., Grizard, S., Patil, C.D., Tran, F.-H., Tran Van, V., Stalinski, R., Laporte, F., Mavingui, P., Després, L., Valiente Moro, C., 2018. Bacterial microbiota of Aedes aegypti mosquito larvae is altered by intoxication with Bacillus thuringiensis israelensis. Parasites & Vectors 11.

  • Bodilis, J., Denet, E., Brothier, E., Graindorge, A., Favre-Bonté, S., Nazaret, S., 2018. Comparative Genomics of Environmental and Clinical Burkholderia cenocepacia Strains Closely Related to the Highly Transmissible Epidemic ET12 Lineage. Frontiers in Microbiology 9.

  • Meyer, T., Renoud, S., Vigouroux, A., Miomandre, A., Gaillard, V., Kerzaon, I., Prigent-Combaret, C., Comte, G., Moréra, S., Vial, L., Lavire, C., 2018. Regulation of hydroxycinnamic acid degradation drives <i>Agrobacterium fabrum</i> lifestyles. Molecular plant-microbe interactions: MPMI.

  • Pham, H.N., Pham, P.A., Nguyen, T.T.H., Meiffren, G., Brothier, E., Lamy, I., Michalet, S., Dijoux-Franca, M.-G., Nazaret, S., 2018. Influence of metal contamination in soil on metabolic profiles of Miscanthus x giganteus belowground parts and associated bacterial communities. Applied Soil Ecology 125, 240-249.

  • Ghedira, K., Harigua-Souiai, E., Hamda, C., Fournier, P., Pujic, P., Guesmi, S., Guizani, I., Miotello, G., Armengaud, J., Normand, P., Sghaier, H., 2018. The PEG-responding desiccome of the alder microsymbiont Frankia alni. Scientific Reports 8, 759.

  • Mallon, C.A., Roux, X., Doorn, G.S., Dini-Andreote, F., Poly, F., Salles, J.F., 2018. The impact of failure: unsuccessful bacterial invasions steer the soil microbial community away from the invader’s niche. The ISME Journal 1.

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Chapitres de livre

  • Bertrand, J.-C., Caumette, P., Normand, P., Ollivier, B., Sime-Ngando, T., 2018. Prokaryote/Eukaryote Dichotomy and Bacteria/Archaea/Eukarya Domains: Two Inseparable Concepts, in: Bertrand, J.-C., Normand, P., Ollivier, B., Sime-Ngando, T. (Eds.), Prokaryotes And Evolution. Springer International Publishing, Cham, p. 1-21.

  • Normand, P., Caumette, P., 2018. Phylogeny and Biodiversity of Prokaryotes, in: Bertrand, J.-C., Normand, P., Ollivier, B., Sime-Ngando, T. (Eds.), Prokaryotes And Evolution. Springer International Publishing, Cham, p. 23-55.

  • Wielgoss, S., Leblond, P., Masson-Boivin, C., Normand, P., 2018. Evolution Underway in Prokaryotes, in: Bertrand, J.-C., Normand, P., Ollivier, B., Sime-Ngando, T. (Eds.), Prokaryotes And Evolution. Springer International Publishing, Cham, p. 339-391.

  • Mavingui, P., Valiente Moro, C., Tortosa, P., 2018. Exploiting symbiotic interactions for vector/disease control, in: Ecology And Evolution Of Infectious Diseases: Pathogen Control And Public Health Management In Low-Income Countries. Oxford University Press, p. 163-179.