Langues du site :

Partenaires

CNRS
UCBL
INRA
ENVL
FR41
IDEX




Rechercher

Sur ce site


Accueil > Productions scientifiques > Année 2017

Année 2017

Articles à comité de lecture



  • Kerangart, S., Cournoyer, B., Loukiadis, E., 2017. C-source metabolic profilings of foodborne Shiga-toxin producing E. coli match serogroup differentiations and highlight functional adaptations. International Journal of Food Microbiology. https://doi.org/10.1016/j.ijfoodmicro.2017.10.018


  • Chonova, T., Labanowski, J., Cournoyer, B., Chardon, C., Keck, F., Laurent, É., Mondamert, L., Vasselon, V., Wiest, L., Bouchez, A., 2017. River biofilm community changes related to pharmaceutical loads emitted by a wastewater treatment plant. Environmental Science and Pollution Research 1-11. https://doi.org/10.1007/s11356-017-0024-0


  • Canouï, E., Blanc, K., Loubinoux, J., Valade, S., Hamard, C., Lefebvre, A., Amorim, S., Bébéar, C., Rodriguez-Nava, V., Lebeaux, D., Launay, O., Alifano, M., Rabbat, A., Kernéis, S., 2017. The value of molecular techniques to diagnose Ureaplasma urealyticum and Nocardia farcinica pleuropneumonia in a patient with diffuse large B-cell lymphoma. International Journal of Infectious Diseases 64, 93-95. https://doi.org/10.1016/j.ijid.2017.09.015


  • Douëllou, T., Delannoy, S., Ganet, S., Fach, P., Loukiadis, E., Montel, M.-C., Sergentet-Thevenot, D., 2017. Molecular characterization of O157:H7, O26:H11 and O103:H2 Shiga toxin-producing Escherichia coli isolated from dairy products. International Journal of Food Microbiology 253, 59-65. https://doi.org/10.1016/j.ijfoodmicro.2017.04.010


  • Lebeaux, D., Freund, R., van Delden, C., Guillot, H., Marbus, S.D., Matignon, M., Van Wijngaerden, E., Douvry, B., De Greef, J., Vuotto, F., Tricot, L., Fernández-Ruiz, M., Dantal, J., Hirzel, C., Jais, J.-P., Rodriguez-Nava, V., Jacobs, F., Lortholary, O., Coussement, J., Anstey, J.R., Antoine, M., Ausselet, N., Belhaj, A., Boelens, J., de Beenhouwer, H., Denis, C., Ho, E., Ieven, M., Jonckheere, S., Knoop, C., le Moine, A., Rodriguez-Villalobos, H., Racapé, J., Roisin, S., Vandercam, B., Vander Zwalmen, M.-L., Vanfraechem, G., Van Laecke, S., Verhaegen, J., Barrou, B., Battistella, P., Bergeron, E., Bouvier, N., Caillard, S., Caumes, E., Chaussade, H., Chauvet, C., Crochette, R., Epailly, E., Essig, M., Gallien, S., Guillemain, R., Herel, C., Hoen, B., Kamar, N., le Gall, T., Levi, C., Lionet, A., Longuet, H., Melica, G., Miel, A., Morel, H., Ammar, S.O., Pattier, S., Peraldi, M.-N., Sayegh, J., Scemla, A., Senechal, A., Tourret, J., Boggian, K., Egli, A., Garzoni, C., Hoffman, M., Hirsch, H.H., Khanna, N., Manuel, O., Meylan, P., Mueller, N.J., Posfay-Barbe, K.M., Vu, D.-L., Weisser, M., Vollaard, A.M., Wunderink, H.F., 2017. Outcome and Treatment of Nocardiosis After Solid Organ Transplantation: New Insights From a European Study. Clinical Infectious Diseases 64, 1396-1405. https://doi.org/10.1093/cid/cix124


  • Loukiadis, E., Bièche-Terrier, C., Malayrat, C., Ferré, F., Cartier, P., Augustin, J.-C., 2017. Distribution of Escherichia coli O157:H7 in ground beef: Assessing the clustering intensity for an industrial-scale grinder and a low and localized initial contamination. International Journal of Food Microbiology 250, 75-81. https://doi.org/10.1016/j.ijfoodmicro.2017.03.009


  • Pages-Monteiro, L., Marti, R., Commun, C., Alliot, N., Bardel, C., Meugnier, H., Perouse-de-Montclos, M., Reix, P., Durieu, I., Durupt, S., Vandenesch, F., Freney, J., Cournoyer, B., Doleans-Jordheim, A., 2017. Strong incidence of Pseudomonas aeruginosa on bacterial rrs and ITS genetic structures of cystic fibrosis sputa. PLOS ONE 12, e0173022. https://doi.org/10.1371/journal.pone.0173022


  • Marti, R., Ribun, S., Aubin, J.-B., Colinon, C., Petit, S., Marjolet, L., Gourmelon, M., Schmitt, L., Breil, P., Cottet, M., Cournoyer, B., 2017. Human-Driven Microbiological Contamination of Benthic and Hyporheic Sediments of an Intermittent Peri-Urban River Assessed from MST and 16S rRNA Genetic Structure Analyses. Frontiers in Microbiology 8. https://doi.org/10.3389/fmicb.2017.00019


  • Jurburg, S.D., Nunes, I., Stegen, J.C., Le Roux, X., Priemé, A., Sørensen, S.J., Salles, J.F., 2017. Autogenic succession and deterministic recovery following disturbance in soil bacterial communities. Scientific Reports 7. https://doi.org/10.1038/srep45691


  • Larousse, M., Rancurel, C., Syska, C., Palero, F., Etienne, C., Industri, B., Nesme, X., Bardin, M., Galiana, E., 2017. Tomato root microbiota and Phytophthora parasitica-associated disease. Microbiome 5, 56. https://doi.org/10.1186/s40168-017-0273-7


  • Joffard, N., Legendre, L., Gibernau, M., Pascal, L., 2017. Differential Accumulation of Volatile Organic Compounds by Leaves and Roots of Two Guianese Philodendron Species, P. fragrantissimum Kunth and P. melinonii Brongn. Chemistry & Biodiversity 14, e1600415. https://doi.org/10.1002/cbdv.201600415


  • Adamo, M., Voyron, S., Girlanda, M., Marmeisse, R., 2017. RNA extraction from decaying wood for (meta)transcriptomic analyses. Canadian Journal of Microbiology 63, 841-850. https://doi.org/10.1139/cjm-2017-0230


  • Marmeisse, R., Kellner, H., Fraissinet-Tachet, L., Luis, P., 2017. Discovering Protein-Coding Genes from the Environment: Time for the Eukaryotes? Trends in Biotechnology 35, 824-835. https://doi.org/10.1016/j.tibtech.2017.02.003


  • Keshavarz-Tohid, V., Taheri, P., Muller, D., Prigent-Combaret, C., Vacheron, J., Taghavi, S.M., Tarighi, S., Moënne-Loccoz, Y., 2017. Phylogenetic diversity and antagonistic traits of root and rhizosphere pseudomonads of bean from Iran for controlling Rhizoctonia solani. Research in Microbiology 168, 760-772. https://doi.org/10.1016/j.resmic.2017.08.002

  • Kasrati, A., Alaoui Jamali, C., Spooner-Hart, R., Legendre, L., Leach, D., Abbad, A., 2017. Chemical Characterization and Biological Activities of Essential Oil Obtained from Mint Timija Cultivated under Mineral and Biological Fertilizers. Journal of Analytical Methods in Chemistry.


  • Lassalle, F., Planel, R., Penel, S., Chapulliot, D., Barbe, V., Dubost, A., Calteau, A., Vallenet, D., Mornico, D., Bigot, T., Guéguen, L., Vial, L., Muller, D., Daubin, V., Nesme, X., 2017. Ancestral Genome Estimation Reveals the History of Ecological Diversification in Agrobacterium. Genome Biology and Evolution 9, 3413-3431. https://doi.org/10.1093/gbe/evx255


  • Rozier, C., Hamzaoui, J., Lemoine, D., Czarnes, S., Legendre, L., 2017. Field-based assessment of the mechanism of maize yield enhancement by Azospirillum lipoferum CRT1. Scientific reports 7, 7416. https://doi.org/10.1038/s41598-017-07929-8
  • Kasrati, A., Alaoui Jamali, C., Spooner-Hart, R., Legendre, L., Leach, D., Abbad, A., 2017. Chemical Characterization and Biological Activities of Essential Oil Obtained from Mint Timija Cultivated under Mineral and Biological Fertilizers. Journal of analytical methods in chemistry 2017.


  • Lhuissier, T., Mercier, P.-E., Michalet, S., Lebot, V., Legendre, L., 2017. Colorimetric assessment of kava (Piper methysticum Forst.) quality. Journal of Food Composition and Analysis 59, 27-34. https://doi.org/10.1016/j.jfca.2017.02.005
  • Petar, P., Philippe, N., Anita, S., 2017. Nitrogenase and Hydrogenase of the Actinobacteria Frankia: From Gene Expression to Proteins Function. Journal of Microbiology Research 7, 79–92.


  • Normand, P., Van Nguyen, T., Battenberg, K., Berry, A.M., Heuvel, B.V., Fernandez, M.P., Pawlowski, K., 2017. Proposal of'Candidatus Frankia californiensis', the uncultured symbiont in nitrogen-fixing root nodules of a phylogenetically broad group of hosts endemic to western North America. International journal of systematic and evolutionary microbiology 67, 3706-3715. https://doi.org/10.1099/ijsem.0.002147
  • Anne-Emmanuelle, H., Hasna, B., Antoine, B., Marjolaine, R., Guillaume, M., Laetitia, C.-G., Gilles, C., Aude, H.-B., 2017. Control of Endophytic Frankia Sporulation by Alnus Nodule Metabolites. Molecular Plant-Microbe Interactions 30, 205–214.


  • Bernardin Souibgui, C., Zoropogui, A., Voisin, J., Ribun, S., Vasselon, V., Pujic, P., Rodriguez-Nava, V., Belly, P., Cournoyer, B., Blaha, D., 2017. Virulence test using nematodes to prescreen <i>Nocardia</i> species capable of inducing neurodegeneration and behavioral disorders. PeerJ 5, e3823. https://doi.org/10.7717/peerj.3823


  • Habbadi, K., Meyer, T., Vial, L., Gaillard, V., Benkirane, R., Benbouazza, A., Kerzaon, I., Achbani, E.H., Lavire, C., 2017. Essential oils of Origanum compactum and Thymus vulgaris exert a protective effect against the phytopathogen Allorhizobium vitis. Environmental Science and Pollution Research International 1-10. https://doi.org/10.1007/s11356-017-1008-9


  • Zotzmann, S., Steinbrink, A., Schleich, K., Frantzmann, F., Xoumpholphakdy, C., Spaeth, M., Valiente Moro, C., Mavingui, P., Klimpel, S., 2017. Bacterial diversity of cosmopolitan Culex pipiens and invasive Aedes japonicus from Germany. Parasitology Research 116, 1899-1906. https://doi.org/10.1007/s00436-017-5466-2


  • Saucereau, Y., Valiente Moro, C., Dieryckx, C., Dupuy, J.-W., Tran, F.H., Girard, V., Potier, P., Mavingui, P., 2017. Comprehensive proteome profiling in Aedes albopictus to decipher Wolbachia-arbovirus interference phenomenon. BMC Genomics 18, 635. https://doi.org/10.1186/s12864-017-3985-y


  • René-Martellet, M., Minard, G., Massot, R., Tran Van, V., Valiente Moro, C., Chabanne, L., Mavingui, P., 2017. Bacterial microbiota associated with Rhipicephalus sanguineus (s.l.) ticks from France, Senegal and Arizona. Parasites & Vectors 10, 416. https://doi.org/10.1186/s13071-017-2352-9


  • Dickson, L.B., Jiolle, D., Minard, G., Moltini-Conclois, I., Volant, S., Ghozlane, A., Bouchier, C., Ayala, D., Paupy, C., Moro, C.V., Lambrechts, L., 2017. Carryover effects of larval exposure to different environmental bacteria drive adult trait variation in a mosquito vector. Science Advances 3, e1700585. https://doi.org/10.1126/sciadv.1700585


  • Goubert, C., Henri, H., Minard, G., Valiente Moro, C., Mavingui, P., Vieira, C., Boulesteix, M., 2017. High-throughput sequencing of transposable element insertions suggests adaptive evolution of the invasive Asian tiger mosquito towards temperate environments. Molecular Ecology 26, 3968-3981. https://doi.org/10.1111/mec.14184


  • Bertin, Y., Habouzit, C., Dunière, L., Laurier, M., Durand, A., Duchez, D., Segura, A., Thévenot-Sergentet, D., Baruzzi, F., Chaucheyras-Durand, F., Forano, E., 2017. Lactobacillus reuteri suppresses E. coli O157:H7 in bovine ruminal fluid: Toward a pre-slaughter strategy to improve food safety? PLOS ONE 12, e0187229. https://doi.org/10.1371/journal.pone.0187229


  • Legendre, C., Hannetel, H., Ranc, A.-G., Bezza, W., Pages, L., Vandenesch, F., Tristan, A., Doleans-Jordheim, A., 2017. Listeria monocytogenes and ocular abscess: an atypical but yet potential association. International Ophthalmology 1-8. https://doi.org/10.1007/s10792-017-0723-z


  • Marti, R., Bécouze-Lareure, C., Ribun, S., Marjolet, L., Bernardin Souibgui, C., Aubin, J.-B., Lipeme Kouyi, G., Wiest, L., Blaha, D., Cournoyer, B., 2017. Bacteriome genetic structures of urban deposits are indicative of their origin and impacted by chemical pollutants. Scientific Reports 7. https://doi.org/10.1038/s41598-017-13594-8


  • Assémien, F.L., Pommier, T., Gonnety, J.T., Gervaix, J., Le Roux, X., 2017. Adaptation of soil nitrifiers to very low nitrogen level jeopardizes the efficiency of chemical fertilization in west african moist savannas. Scientific Reports 7. https://doi.org/10.1038/s41598-017-10185-5


  • Denet, E., Coupat-Goutaland, B., Nazaret, S., Pélandakis, M., Favre-Bonté, S., 2017. Diversity of free-living amoebae in soils and their associated human opportunistic bacteria. Parasitology Research. https://doi.org/10.1007/s00436-017-5632-6

  • Vacheron, J., Desbrosses, G., Renoud, S., Padilla-Aguilar, R.-M., Walker, V., Muller, D., Prigent-Combaret, C., 2017. Differential contribution of plant-beneficial functions from Pseudomonas kilonensis F113 to root system architecture alterations in Arabidopsis thaliana and Zea mays. Molecular Plant-Microbe Interactions MPMI–07. https://doi.org/10.1094/MPMI-07-17-0185-R


  • Legay, N., Piton, G., Arnoldi, C., Bernard, L., Binet, M.-N., Mouhamadou, B., Pommier, T., Lavorel, S., Foulquier, A., Clément, J.-C., 2017. Soil legacy effects of climatic stress, management and plant functional composition on microbial communities influence the response of Lolium perenne to a new drought event. Plant and Soil 1-22. https://doi.org/10.1007/s11104-017-3403-x


  • Florio, A., Pommier, T., Gervaix, J., Bérard, A., Le Roux, X., 2017. Soil C and N statuses determine the effect of maize inoculation by plant growth-promoting rhizobacteria on nitrifying and denitrifying communities. Scientific Reports 7. https://doi.org/10.1038/s41598-017-08589-4


  • Sánchez-Herrera, K., Sandoval, H., Mouniee, D., Ramírez-Durán, N., Bergeron, E., Boiron, P., Sánchez-Saucedo, N., Rodríguez-Nava, V., 2017. Molecular identification of Nocardia species using the sod A gene. New Microbes and New Infections 19, 96-116. https://doi.org/10.1016/j.nmni.2017.03.008


  • Galia, W., Leriche, F., Cruveiller, S., Garnier, C., Navratil, V., Dubost, A., Blanquet-Diot, S., Thevenot-Sergentet, D., 2017. Strand-specific transcriptomes of Enterohemorrhagic Escherichia coli in response to interactions with ground beef microbiota: interactions between microorganisms in raw meat. BMC Genomics 18, 574. https://doi.org/10.1186/s12864-017-3957-2


  • Chonova, T., Lecomte, V., Bertrand-Krajewski, J.-L., Bouchez, A., Labanowski, J., Dagot, C., Lévi, Y., Perrodin, Y., Wiest, L., Gonzalez-Ospina, A., Cournoyer, B., Sebastian, C., 2017. The SIPIBEL project: treatment of hospital and urban wastewater in a conventional urban wastewater treatment plant. Environmental Science and Pollution Research 1-10. https://doi.org/10.1007/s11356-017-9302-0


  • Roy, M., Pozzi, A.C., Gareil, R., Nagati, M., Manzi, S., Nouioui, I., Sharikadze, N., Jargeat, P., Gryta, H., Moreau, P.-A., Fernandez, M.P., Gardes, M., 2017. Alder and the Golden Fleece: high diversity of Frankia and ectomycorrhizal fungi revealed from Alnus glutinosa subsp. barbata roots close to a Tertiary and glacial refugium. PeerJ 5, e3479. https://doi.org/10.7717/peerj.3479


  • Michalet, S., Rouifed, S., Pellassa-Simon, T., Fusade-Boyer, M., Meiffren, G., Nazaret, S., Piola, F., 2017. Tolerance of Japanese knotweed s.l. to soil artificial polymetallic pollution: early metabolic responses and performance during vegetative multiplication. Environmental Science and Pollution Research 1-11. https://doi.org/10.1007/s11356-017-9716-8


  • Weisser, W.W., Roscher, C., Meyer, S., Ebeling, A., Luo, G., Allan, E., Beßler, H., Barnard, R., Buchmann, N., Buscot, F., Engels, C., Fischer, C., Fischer, M., Gessler, A., Gleixner, G., Halle, S., Hildebrandt, A., Hillebrand, H., de Kroon, H., Lange, M., Leimer, S., Le Roux, X., Milcu, A., Mommer, L., Niklaus, P., Oelmann, Y., Proulx, R., Roy, J., Scherber, C., Scherer-Lorenzen, M., Scheu, S., Tscharntke, T., Wachendorf, M., Wagg, C., Weigelt, A., Wilcke, W., Wirth, C., Schulze, E.-D., Schmid, B., Eisenhauer, N., 2017. Biodiversity effects on ecosystem functioning in a 15-year grassland experiment: patterns, mechanisms, and open questions. Basic and Applied Ecology, Biodiversity effects on ecosystem functioning: the Jena Experiment 23, 1-73. https://doi.org/10.1016/j.baae.2017.06.002


  • Lemanceau, P., Blouin, M., Muller, D., Moënne-Loccoz, Y., 2017. Let the Core Microbiota Be Functional. Trends in Plant Science 22, 583-595. https://doi.org/10.1016/j.tplants.2017.04.008


  • Almario, J., Bruto, M., Vacheron, J., Prigent-Combaret, C., Moënne-Loccoz, Y., Muller, D., 2017. Distribution of 2,4-diacetylphloroglucinol biosynthetic genes among the Pseudomonas spp. reveals unexpected polyphyletism. Frontiers in Microbiology 8, 1218. https://doi.org/10.3389/fmicb.2017.01218


  • Hay, A.E., Boubakri, H., Buonomo, A., Rey, M., Meiffren, G., Cotin-Galvan, L., Comte, G., Herrera-Belaroussi, A., 2017. Control of Endophytic Frankia Sporulation by Alnus Nodule Metabolites. Molecular Plant-Microbe Interactions 30, 205-214. https://doi.org/10.1094/MPMI-11-16-0235-R


  • Barot, S., Allard, V., Cantarel, A., Enjalbert, J., Gauffreteau, A., Goldringer, I., Lata, J.-C., Le Roux, X., Niboyet, A., Porcher, E., 2017. Designing mixtures of varieties for multifunctional agriculture with the help of ecology. A review. Agronomy for Sustainable Development 37, 13. https://doi.org/10.1007/s13593-017-0418-x


  • Crampon, M., Cébron, A., Portet-Koltalo, F., Uroz, S., Le Derf, F., Bodilis, J., 2017. Low effect of phenanthrene bioaccessibility on its biodegradation in diffusely contaminated soil. Environmental Pollution 225, 663-673. https://doi.org/10.1016/j.envpol.2017.03.053


  • López-Lozano, N.E., Pereira e Silva, M.C., Poly, F., Guillaumaud, N., Van Elsas, J.D., Salles, J.F., 2017. Denitrifying bacterial communities display different temporal fluctuation patterns across Dutch agricultural soils. Antonie van Leeuwenhoek 1-13. https://doi.org/10.1007/s10482-017-0898-3


  • Schwob, G., Roy, M., Manzi, S., Pommier, T., Fernandez, Mp., 2017. Green alder (Alnus viridis) encroachment shapes microbial communities in subalpine soils and impacts its bacterial or fungal symbionts differently. Environmental Microbiology n/a-n/a. https://doi.org/10.1111/1462-2920.13818

0 | 50

Livres

Chapitres de livre