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Accueil > Productions scientifiques > Année 2016

Année 2016

Articles à comité de lecture

  • Namour, P., Eschbach, D., Schmitt, L., Cournoyer, B., Moulin, B., Breil, P., 2016. Influence des faciès hydro-morphologiques sur la répartition des polluants dans les sédiments d’une rivière périurbaine. La Chaudanne (France). Instrumentation Mesure Métrologie 15, 57-72.

  • Bouri, M., Chattaoui, M., Gharsa, H.B., Mcclean, A., Kluepfel, D., Nesme, X., Rhouma, A., 2016. Analysis of agrobacterium populations isolated from Tunisian soils: genetic structure, Avirulent-virulent ratios and characterization of tumorigenic strains. Journal of Plant Pathology 98, 265-274.

  • Lebot, V., Legendre, L., 2016. Comparison of kava (Piper methysticum Forst.) varieties by UV absorbance of acetonic extracts and high-performance thin-layer chromatography. Journal of Food Composition and Analysis 48, 25-33.

  • Nouioui, I., Gtari, M., Göker, M., Ghodhbane-Gtari, F., Tisa, L.S., Fernandez, M.P., Normand, P., Huntemann, M., Clum, A., Pillay, M., Varghese, N., Reddy, T.B.K., Ivanova, N., Woyke, T., Kyrpides, N.C., Klenk, H.-P., 2016. Draft Genome Sequence of Frankia Strain G2, a Nitrogen-Fixing Actinobacterium Isolated from Casuarina equisetifolia and Able To Nodulate Actinorhizal Plants of the Order Rhamnales. Genome Announcements 4, e00437-16.

  • Reddy, M.S., Kour, M., Aggarwal, S., Ahuja, S., Marmeisse, R., Fraissinet-Tachet, L., 2016. Metal induction of a Pisolithus albus metallothionein and its potential involvement in heavy metal tolerance during mycorrhizal symbiosis. Environmental Microbiology 18, 2446-2454.

  • Cotin-Galvan, L., Pozzi, A.C., Schwob, G., Fournier, P., Fernandez, M.P., Herrera-Belaroussi, A., 2016. In-planta Sporulation Capacity Enhances Infectivity and Rhizospheric Competitiveness of Frankia Strains. Microbes and Environments 31, 11-18.

  • Lepère, C., Domaizon, I., Hugoni, M., Vellet, A., Debroas, D., 2016. Diversity and Dynamics of Active Small Microbial Eukaryotes in the Anoxic Zone of a Freshwater Meromictic Lake (Pavin, France). Frontiers in Microbiology 7.
  • Carro, L., Pujic, P., Alloisio, N., Fournier, P., Boubakri, H., Poly, F., Rey, M., Heddi, A., Normand, P., 2016. Physiological effects of major up-regulated Alnus glutinosa peptides on Frankia sp. ACN14a. Microbiology 162, 1173–1184.

  • Mommer, L., Hinsinger, P., Prigent-Combaret, C., Visser, E.J.W., 2016. Advances in the rhizosphere: stretching the interface of life. Plant and Soil 407, 1-8.

  • Randriamboavonjy, J.I., Loirand, G., Vaillant, N., Lauzier, B., Derbré, S., Michalet, S., Pacaud, P., Tesse, A., 2016. Cardiac Protective Effects of Moringa oleifera Seeds in Spontaneous Hypertensive Rats. American Journal of Hypertension 29, 873-881.

  • Rozier, C., Erban, A., Hamzaoui, J., Prigent-Combaret, C., Comte, G., Kopka, J., Czarnes, S., Legendre, L., 2016. Xylem Sap Metabolite Profile Changes During Phytostimulation of Maize by the Plant Growth-Promoting Rhizobacterium, Azospirillum lipoferum CRT1. Metabolomics (Los Angel) 6, 2153–0769.

  • Lebot,, V., Legendre, L., 2016. Comparison of kava (<i>Piper methysticum</i> Forst.) varieties by UV absorbance of acetonic extracts and high-performance thin-layer chromatography 48, 25-33.

  • Legay, N., Lavorel, S., Baxendale, C., Krainer, U., Bahn, M., Binet, M.-N., Cantarel, A.A.M., Colace, M.-P., Foulquier, A., Kastl, E.-M., Grigulis, K., Mouhamadou, B., Poly, F., Pommier, T., Schloter, M., Clément, J.-C., Bardgett, R.D., 2016. Influence of plant traits, soil microbial properties, and abiotic parameters on nitrogen turnover of grassland ecosystems. Ecosphere 7, n/a-n/a.

  • Schmitt, L., Grosprêtre, L., Breil, P., Namour, P., Lafont, M., Delile, H., Eschbach, D., Jacob-Rousseau, N., Cournoyer, B., 2016. Pour l’étude interdisciplinaire des petits hydrosystèmes périurbains (bassin de l’Yzeron, France). BSGLg.

  • Gignoux, J., Konaté, S., Lahoreau, G., Le Roux, X., Simioni, G., 2016. Allocation strategies of savanna and forest tree seedlings in response to fire and shading: outcomes of a field experiment. Scientific Reports 6, 38838.

  • Simonet, P., Gaget, K., Parisot, N., Duport, G., Rey, M., Febvay, G., Charles, H., Callaerts, P., Colella, S., Calevro, F., 2016. Disruption of phenylalanine hydroxylase reduces adult lifespan and fecundity, and impairs embryonic development in parthenogenetic pea aphids. Scientific Reports 6, 34321.

  • Cavé, L., Brothier, E., Abrouk, D., Bouda, P.S., Hien, E., Nazaret, S., 2016. Efficiency and sensitivity of the digital droplet PCR for the quantification of antibiotic resistance genes in soils and organic residues. Applied Microbiology and Biotechnology 1-12.

  • Youenou, B., Hien, E., Deredjian, A., Brothier, E., Favre-Bonté, S., Nazaret, S., 2016. Impact of untreated urban waste on the prevalence and antibiotic resistance profiles of human opportunistic pathogens in agricultural soils from Burkina Faso. Environmental Science and Pollution Research 1-13.

  • Simonin, M., Richaume, A., Guyonnet, J.P., Dubost, A., Martins, J.M.F., Pommier, T., 2016. Titanium dioxide nanoparticles strongly impact soil microbial function by affecting archaeal nitrifiers. Scientific Reports 6, 33643.

  • Nouioui, I., Ghodhbane-Gtari, F., Montero-Calasanz, M. del C., Göker, M., Meier-Kolthoff, J.P., Schumann, P., Rohde, M., Goodfellow, M., Fernandez, M.P., Normand, P., Tisa, L.S., Klenk, H.-P., Gtari, M., 2016. Proposal of a type strain for Frankia alni (Woronin 1866) Von Tubeuf 1895, emended description of Frankia alni, and recognition of Frankia casuarinae sp. nov. and Frankia elaeagni sp. nov. International Journal of Systematic and Evolutionary Microbiology 66, 5201–5210.

  • BORLAND, S., PRIGENT-COMBARET, C., WISNIEWSKI-DYE, F., 2016. Bacterial hybrid histidine kinases in plant-bacteria interactions. Microbiology 162, 1715-1734.

  • Simonin, M., Martins, J.M.F., Uzu, G., Vince, E., Richaume, A., 2016. Combined Study of Titanium Dioxide Nanoparticle Transport and Toxicity on Microbial Nitrifying Communities under Single and Repeated Exposures in Soil Columns. Environmental Science & Technology 50, 10693-10699.

  • Boukerb, A.M., Decor, A., Ribun, S., Tabaroni, R., Rousset, A., Commin, L., Buff, S., Doléans-Jordheim, A., Vidal, S., Varrot, A., Imberty, A., Cournoyer, B., 2016. Genomic Rearrangements and Functional Diversification of lecA and lecB Lectin-Coding Regions Impacting the Efficacy of Glycomimetics Directed against Pseudomonas aeruginosa. Antimicrobials, Resistance and Chemotherapy 811.

  • Cormier, F., Foulkes, J., Hirel, B., Gouache, D., Moënne-Loccoz, Y., Le Gouis, J., 2016. Breeding for increased nitrogen-use efficiency: a review for wheat (T. aestivum L.). Plant Breeding 135, 255-278.

  • Bodilis, J., Youenou, B., Briolay, J., Brothier, E., Favre-Bonté, S., Nazaret, S., 2016. Draft Genome Sequences of Stenotrophomonas maltophilia Strains Sm32COP, Sm41DVV, Sm46PAILV, SmF3, SmF22, SmSOFb1, and SmCVFa1, Isolated from Different Manures in France. Genome Announcements 4, e00841-16.

  • Voisin, J., Cournoyer, B., Mermillod-Blondin, F., 2016. Assessment of artificial substrates for evaluating groundwater microbial quality. Ecological Indicators 71, 577-586.

  • Ma, W., Jiang, S., Assemien, F., Qin, M., Ma, B., Xie, Z., Liu, Y., Feng, H., Du, G., Ma, X., Le Roux, X., 2016. Response of microbial functional groups involved in soil N cycle to N, P and NP fertilization in Tibetan alpine meadows. Soil Biology and Biochemistry 101, 195-206.

  • Vacheron, J., Moënne-Loccoz, Y., Dubost, A., Gonçalves-Martins, M., Muller, D., Prigent-Combaret, C., 2016. Fluorescent Pseudomonas Strains with only Few Plant-Beneficial Properties Are Favored in the Maize Rhizosphere. Plant Biotic Interactions 7, 1212.

  • Muñoz-Cuervo, I., Malapa, R., Michalet, S., Lebot, V., Legendre, L., 2016. Secondary metabolite diversity in taro, Colocasia esculenta (L.) Schott, corms. Journal of Food Composition and Analysis 52, 24-32.

  • Roussel, C., Cordonnier, C., Galia, W., Olivier, L.G., Thévenot, J., Chalancon, S., Alric, M., Thevenot-Sergentet, D., Leriche, F., Van de Wiele, T., Livrelli, V., Blanquet-Diot, S., 2016. Increased EHEC survival and virulence gene expression indicate an enhanced pathogenicity upon simulated pediatric gastrointestinal conditions. Pediatric Research.

  • Michelland, R., Thioulouse, J., Kyselková, M., Grundmann, G., 2016. Bacterial Community Structure at the Microscale in Two Different Soils. Microbial Ecology 72, 717-724.

  • Labanowski, J., Laurent, E., Chonova, T., Bouchez, A., Cournoyer, B., Marjolet, L., Marti, R., Mondamert, L., 2016. Rejets d’effluents hospitaliers : évaluation de la persistance environnementale des médicaments et des bactéries pathogènes: La démarche du projet Persist-Env. Techniques Sciences Méthodes 22-30.

  • Franche, C., Normand, P., Pawlowski, K., Tisa, L.S., Bogusz, D., 2016. An update on research on Frankia and actinorhizal plants on the occasion of the 18th meeting of the Frankia-actinorhizal plants symbiosis. Symbiosis 70, 1-4.

  • Barbi, F., Prudent, E., Vallon, L., Buée, M., Dubost, A., Legout, A., Marmeisse, R., Fraissinet-Tachet, L., Luis, P., 2016. Tree species select diverse soil fungal communities expressing different sets of lignocellulolytic enzyme-encoding genes. Soil Biology and Biochemistry 100, 149-159.

  • Dangles, O., Loirat, J., Freour, C., Serre, S., Vacher, J., Le Roux, X., 2016. Research on Biodiversity and Climate Change at a Distance: Collaboration Networks between Europe and Latin America and the Caribbean. PLOS ONE 11, e0157441.

  • Florio, A., Maienza, A., Dell’Abate, M.T., Stazi, S.R., Benedetti, A., 2016. Changes in the activity and abundance of the soil microbial community in response to the nitrification inhibitor 3,4-dimethylpyrazole phosphate (DMPP). Journal of Soils and Sediments 1-11.

  • Goubert, C., Minard, G., Vieira, C., Boulesteix, M., 2016. Population genetics of the Asian tiger mosquito Aedes albopictus, an invasive vector of human diseases. Heredity.

  • Galia, W., Jameh, N., Perrin, C., Genay, M., Dary-Mourot, A., 2016. Acquisition of PrtS in Streptococcus thermophilus is not enough in certain strains to achieve rapid milk acidification. Dairy Science & Technology 1-14.

  • Le, H.T., Ho Tu, C., Trinh, Q.H., Trinh, D.A., Luu, M.T.N., Tran, H.S., Orange, D., Janeau, J.-L., Merroune, A., Rochelle-Newall, E.J., Pommier, T., 2016. Responses of aquatic bacteria to terrestrial runoff: effects on community structure and key taxonomic groups. Aquatic Microbiology 7, 889.

  • Vacheron, J., Combes-Meynet, E., Walker, V., Gouesnard, B., Muller, D., Moënne-Loccoz, Y., Prigent-Combaret, C., 2016. Expression on roots and contribution to maize phytostimulation of 1-aminocyclopropane-1-decarboxylate deaminase gene acdS in Pseudomonas fluorescens F113. Plant and Soil 407, 187-202.

  • Debing, Y., Ramière, C., Dallmeier, K., Piorkowski, G., Trabaud, M.-A., Lebossé, F., Scholtès, C., Roche, M., Legras-Lachuer, C., de Lamballerie, X., André, P., Neyts, J., 2016. Hepatitis E virus mutations associated with ribavirin treatment failure result in altered viral fitness and ribavirin sensitivity. Journal of Hepatology.

  • Kerangart, S., Douëllou, T., Delannoy, S., Fach, P., Beutin, L., Sergentet-Thévenot, D., Cournoyer, B., Loukiadis, E., 2016. Variable tellurite resistance profiles of clinically-relevant Shiga toxin-producing Escherichia coli (STEC) influence their recovery from foodstuffs. Food Microbiology 59, 32-42.

  • Sarkar, I., Normand, P., Tisa, L.S., Gtari, M., Bothra, A., Sen, A., 2016. Characterization of PAS domains in Frankia and selected Actinobacteria and their possible interaction with other co-domains for environmental adaptation. Symbiosis 70, 69–78.

  • Douëllou, T., Delannoy, S., Ganet, S., Mariani-Kurkdjian, P., Fach, P., Loukiadis, E., Montel, M., Thevenot-Sergentet, D., 2016. Shiga toxin-producing Escherichia coli strains isolated from dairy products — Genetic diversity and virulence gene profiles. International Journal of Food Microbiology 232, 52-62.

  • Persson, T., Van Nguyen, T., Alloisio, N., Pujic, P., Berry, A.M., Normand, P., Pawlowski, K., 2016. The N-metabolites of roots and actinorhizal nodules from Alnus glutinosa and Datisca glomerata: can D. glomerata change N-transport forms when nodulated? Symbiosis 70, 149–157.

  • Jameh, N., Galia, W., Awussi, A.A., Roux, E., Genay, M., Perrin, C., Dary-Mourot, A., 2016. Characterization of a new peptide transport system in Streptococcus thermophilus. Food Research International 86, 34-45.

  • Lebot, V., Michalet, S., Legendre, L., 2016. Identification and quantification of phenolic compounds responsible for the antioxidant activity of sweet potatoes with different flesh colours using high performance thin layer chromatography (HPTLC). Journal of Food Composition and Analysis 49, 94-101.

  • Coussement, J., Lebeaux, D., van Delden, C., Guillot, H., Freund, R., Marbus, S., Melica, G., Van Wijngaerden, E., Douvry, B., Van Laecke, S., Vuotto, F., Tricot, L., Fernández-Ruiz, M., Dantal, J., Hirzel, C., Jais, J.-P., Rodriguez-Nava, V., Lortholary, O., Jacobs, F., European Study Group for Nocardia in Solid Organ Transplantation, 2016. Nocardia infection in solid organ transplant recipients: a multicenter European case-control study. Clinical Infectious Diseases ciw241.

  • Baude, J., Vial, L., Villard, C., Campillo, T., Lavire, C., Nesme, X., Hommais, F., 2016. Coordinated Regulation of Species-Specific Hydroxycinnamic Acid Degradation and Siderophore Biosynthesis Pathways in Agrobacterium fabrum. Applied and Environmental Microbiology 82, AEM.00419-16.

  • Niklaus, P.A., Le Roux, X., Poly, F., Buchmann, N., Scherer-Lorenzen, M., Weigelt, A., Barnard, R.L., 2016. Plant species diversity affects soil–atmosphere fluxes of methane and nitrous oxide. Oecologia 1-12.

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Chapitres de livre

  • Bronner, G., Debroas, D., Enault, F., Hugoni, M., Jouan-Dufournel, I., Mary, I., Ravet, V., Roux, S., Taïb, N., 2016. Study of Prokaryotes and Viruses in Aquatic Ecosystems by Metagenetic and Metagenomic Approaches, dans: Sime-Ngando, T., Boivin, P., Chapron, E., Jezequel, D., Meybeck, M. (Éd.), Lake Pavin. Springer International Publishing, Cham, p. 245-254.

  • Marmeisse, R., Girlanda, M., 2016. 10 Mycorrhizal Fungi and the Soil Carbon and Nutrient Cycling, dans: Druzhinina, I.S., Kubicek, C.P. (Éd.), Environmental And Microbial Relationships. Springer International Publishing, Cham, p. 189-203.

  • Yadav, R.K., Bragalini, C., Fraissinet-Tachet, L., Marmeisse, R., Luis, P., 2016. Metatranscriptomics of Soil Eukaryotic Communities, dans: Martin, F., Uroz, S. (Éd.), Microbial Environmental Genomics (Meg). Springer New York, New York, NY, p. 273-287.