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Home > Scientific productions > 2015

2015

Articles à comité de lecture


  • Chahad AM, et al. 2015. Medicinal Plants from the Ouaddaï Province (Chad): An Ethnobotanical Survey of Plants Used in Traditional Medicine. Journal of Alternative and Complementary Medicine (New York, N.Y.). 21:569-577. doi: 10.1089/acm.2014.0243.


  • Eggermont H, et al. 2015. Nature-based Solutions: New Influence for Environmental Management and Research in Europe. GAIA - Ecological Perspectives for Science and Society. 24:243-248. doi: 10.14512/gaia.24.4.9.


  • Cotin-Galvan L, et al. 2015. <i>In-planta</i> Sporulation Capacity Enhances Infectivity and Rhizospheric Competitiveness of <i>Frankia</i> Strains. Microbes and environments. doi: 10.1264/jsme2.ME15090.


  • Lebot V, Lawac F, Michalet S, Legendre L. 2015. Characterization of taro [Colocasia esculenta (L.) Schott] germplasm for improved flavonoid composition and content. Plant Genetic Resources. 1-9. doi: 10.1017/S1479262115000581.


  • Cabrol L, et al. 2015. Management of microbial communities through transient disturbances enhances the functional resilience of nitrifying gas-biofilters to future disturbances. Environmental Science & Technology. doi: 10.1021/acs.est.5b02740.


  • Chaabane F, et al. 2015. In vitro and in vivo anti-melanoma effects of Daphne gnidium aqueous extract via activation of the immune system. Tumor Biology. doi: 10.1007/s13277-015-4492-x.


  • Reddy MS, et al. 2015. Metal induction of a <i>Pisolithus albus</i> metallothionein and its potential involvement in heavy metal tolerance during mycorrhizal symbiosis: <i>Pisolithus albus</i> metallothionein in metal tolerance. Environmental Microbiology. n/a-n/a. doi: 10.1111/1462-2920.13149.


  • Boukerb AM, Marti R, Cournoyer B. 2015. Genome Sequences of Three Strains of the Pseudomonas aeruginosa PA7 Clade. Genome Announcements. 3:e01366-15. doi: 10.1128/genomeA.01366-15.


  • Simonin M, et al. 2015. Coupling Between and Among Ammonia Oxidizers and Nitrite Oxidizers in Grassland Mesocosms Submitted to Elevated CO2 and Nitrogen Supply. Microbial Ecology. 70:809-818. doi: 10.1007/s00248-015-0604-9.


  • Douam F, et al. 2015. Specialization of hepatitis C virus envelope glycoproteins for B-lymphocytes in chronically infected patients. Journal of Virology. JVI.02516-15. doi: 10.1128/JVI.02516-15.


  • Legay N, et al. 2015. Plant species identities and fertilization influence on arbuscular mycorrhizal fungal colonisation and soil bacterial activities. Applied Soil Ecology. doi: 10.1016/j.apsoil.2015.10.006.


  • Borland S, Oudart A, Prigent-Combaret C, Brochier-Armanet C, Wisniewski-Dyé F. 2015. Genome-wide survey of two-component signal transduction systems in the plant growth-promoting bacterium Azospirillum. BMC Genomics. 16. doi: 10.1186/s12864-015-1962-x.


  • Trinh DA, et al. 2015. Impact of terrestrial runoff on organic matter, trophic state, and phytoplankton in a tropical, upland reservoir. Aquatic Sciences. 1-13. doi: 10.1007/s00027-015-0439-y.


  • Jusselme MD, et al. 2015. Variations in snow depth modify N-related soil microbial abundances and functioning during winter in subalpine grassland. Soil Biology and Biochemistry. doi: 10.1016/j.soilbio.2015.09.013.


  • Branco L, Rodriguez-Nava V, Boiron P, Pinheiro D. 2015. Disseminated nocardiosis: report of five cases. JMM Case Reports. 2. doi: 10.1099/jmmcr.0.000046.


  • Voisin J, Cournoyer B, Mermillod-Blondin F. 2015. Utilisation de billes de verre comme substrats artificiels pour la caractérisation des communautés microbiennes dans les nappes phréatiques : mise au point méthodologique. La Houille Blanche. 52-57. doi: 10.1051/lhb/20150046.


  • Hugoni M, et al. 2015. Temporal dynamics of active <i>Archaea</i> in oxygen-depleted zones of two deep lakes: Active archaeal communities in lacustrine ecosystems. Environmental Microbiology Reports. 7:321-329. doi: 10.1111/1758-2229.12251.


  • Hugoni M, et al. 2015. Temporal Dynamics of Active Prokaryotic Nitrifiers and Archaeal Communities from River to Sea. Microbial Ecology. 70:473-483. doi: 10.1007/s00248-015-0601-z.


  • Debroas D, Hugoni M, Domaizon I. 2015. Evidence for an active rare biosphere within freshwater protists community. Molecular Ecology. 24:1236-1247. doi: 10.1111/mec.13116.


  • Bardon C, et al. 2015. Identification of B-type procyanidins in <i>Fallopia</i> spp. involved in biological denitrification inhibition (BDI): B-type procyanidins from Fallopia involved in BDI. Environmental Microbiology. doi: 10.1111/1462-2920.13062.

  • Faure D, et al. 2015. Environmental microbiology as a mosaic of explored ecosystems and issues. Environmental Science and Pollution Research International. 22:13577-13598. doi: 10.1007/s11356-015-5164-5.


  • Marnata C, et al. 2015. Determinants involved in hepatitis C virus and GB virus B primate host restriction. Journal of Virology. JVI.01161-15. doi: 10.1128/JVI.01161-15.


  • Minard G, et al. 2015. French invasive Asian tiger mosquito populations harbor reduced bacterial microbiota and genetic diversity compared to Vietnamese autochthonous relatives. Microbial Symbioses. 6:970. doi: 10.3389/fmicb.2015.00970.


  • Yan X, et al. 2015. Brilliant glyconanocapsules for trapping of bacteria. Chem. Commun. 51:13193-13196. doi: 10.1039/C5CC04653J.


  • Roche M, et al. 2015. Deregulation of miR-183 and KIAA0101 in Aggressive and Malignant Pituitary Tumors. Frontiers in Medicine. 2. doi: 10.3389/fmed.2015.00054.


  • Jusselme MD, Poly F, Lebeau T, Rouland-lefèvre C, Miambi E. 2015. Effects of earthworms on the fungal community and microbial activity in root-adhering soil of Lantana camara during phytoextraction of lead. Applied Soil Ecology. 96:151-158. doi: 10.1016/j.apsoil.2015.07.011.


  • Calattini S, et al. 2015. Functional and Biochemical Characterization of HCV Particles Produced in a Humanized Liver Mouse Model. Journal of Biological Chemistry. jbc.M115.662999. doi: 10.1074/jbc.M115.662999.


  • Youenou B, et al. 2015. Comparative genomics of environmental and clinical <i>Stenotrophomonas maltophilia</i> strains with different antibiotic resistance profiles. Genome Biology and Evolution. evv161. doi: 10.1093/gbe/evv161.


  • Gtari M, et al. 2015. Cultivating the uncultured: growing the recalcitrant cluster-2 Frankia strains. Scientific Reports. 5:13112. doi: 10.1038/srep13112.


  • Boubakri H, et al. 2015. Absence of pupylation (prokaryotic ubiquitin-like protein modification) affects morphological and physiological differentiation in <i>Streptomyces coelicolor</i> . Journal of Bacteriology. JB.00591-15. doi: 10.1128/JB.00591-15.


  • Chamam A, Wisniewski-Dyé F, Comte G, Bertrand C, Prigent-Combaret C. 2015. Differential responses of Oryza sativa secondary metabolism to biotic interactions with cooperative, commensal and phytopathogenic bacteria. Planta. doi: 10.1007/s00425-015-2382-5.


  • René-Martellet M, et al. 2015. Update on epidemiology of canine babesiosis in Southern France. BMC Veterinary Research. 11. doi: 10.1186/s12917-015-0525-3.


  • Lassalle F, Muller D, Nesme X. 2015. Ecological speciation in bacteria: reverse ecology approaches reveal the adaptive part of bacterial cladogenesis. Research in Microbiology. doi: 10.1016/j.resmic.2015.06.008.


  • Doré J, et al. 2015. Comparative genomics, proteomics and transcriptomics give new insight into the exoproteome of the basidiomycete <i>Hebeloma cylindrosporum</i> and its involvement in ectomycorrhizal symbiosis. New Phytologist. n/a-n/a. doi: 10.1111/nph.13546.


  • Crouzet O, et al. 2015. Functional and structural responses of soil N-cycling microbial communities to the herbicide mesotrione: a dose-effect microcosm approach. Environmental Science and Pollution Research. 1-11. doi: 10.1007/s11356-015-4797-8.


  • Sghaier H, et al. 2015. Stone-dwelling actinobacteria Blastococcus saxobsidens, Modestobacter marinus and Geodermatophilus obscurus proteogenomes. The ISME Journal. doi: 10.1038/ismej.2015.108.

  • Svistoonoff S, et al. 2015. How Transcriptomics Revealed New Information on Actinorhizal Symbioses Establishment and Evolution. Biological Nitrogen Fixation, 2 Volume Set. 425. http://books.google.fr/books?hl=fr&lr=&id=TR3yCQAAQBAJ&oi=fnd&pg=PA425&ots=E7vL8QMftV&sig=Wr0CSu23thrAjEPvhWz1z1y7bFs.

  • Normand P, Benson DR, Tisa LS. 2015. Genome Characteristics of Frankia sp. Reflect Host Range and Host Plant Biogeography. Biological Nitrogen Fixation, 2 Volume Set. 245. http://books.google.fr/books?hl=fr&lr=&id=TR3yCQAAQBAJ&oi=fnd&pg=PA245&ots=E7vL8QMfo0&sig=XPqUfEHoOQEIzXqSJW2HFiwK4I8.


  • Barot S, et al. 2015. Evolving away from the linear model of research: a response to Courchamp et al. Trends in Ecology & Evolution. doi: 10.1016/j.tree.2015.05.005.


  • Fénéant L, et al. 2015. New insights into the understanding of hepatitis C virus entry and cell-to-cell transmission by using the ionophore Monensin A. Journal of Virology. JVI.00192-15. doi: 10.1128/JVI.00192-15.


  • Persson T, et al. 2015. Candidatus Frankia Datiscae Dg1, the Actinobacterial Microsymbiont of Datisca glomerata, Expresses the Canonical nod Genes nodABC in Symbiosis with Its Host Plant Börnke, F. PLOS ONE. 10:e0127630. doi: 10.1371/journal.pone.0127630.


  • Heraud S, et al. 2015. Direct Identification of <i>Staphylococcus aureus</i> and Determination of Methicillin Susceptibility From Positive Blood-Culture Bottles in a Bact/ALERT System Using Binax Now <i>S. aureus</i> and PBP2a Tests. Annals of Laboratory Medicine. 35:454. doi: 10.3343/alm.2015.35.4.454.


  • Dequivre M, et al. 2015. Small RNA Deep-Sequencing Analyses Reveal a New Regulator of Virulence in Agrobacterium fabrum C58. Molecular Plant-Microbe Interactions. 28:580-589. doi: 10.1094/MPMI-12-14-0380-FI.


  • Granqvist E, et al. 2015. Bacterial-induced calcium oscillations are common to nitrogen-fixing associations of nodulating legumes and nonlegumes. New Phytologist. n/a-n/a. doi: 10.1111/nph.13464.


  • Raquin V, et al. 2015. Native Wolbachia from Aedes albopictus Blocks Chikungunya Virus Infection In Cellulo Bourtzis, K. PLOS ONE. 10:e0125066. doi: 10.1371/journal.pone.0125066.


  • George DR, et al. 2015. Should the poultry red mite Dermanyssus gallinae be of wider concern for veterinary and medical science? Parasites & Vectors. 8:1-10. doi: 10.1186/s13071-015-0768-7.


  • Bonanno L, et al. 2015. Diversity of Shiga toxin-producing Escherichia coli (STEC) O26:H11: characterization of stx subtypes and insertion sites of Stx and EspK bacteriophages. Applied and Environmental Microbiology. AEM.00077-15. doi: 10.1128/AEM.00077-15.


  • Goubert C, et al. 2015. De novo assembly and annotation of the Asian tiger mosquito (Aedes albopictus) repeatome with dnaPipeTE from raw genomic reads and comparative analysis with the yellow fever mosquito (Aedes aegypti). Genome Biology and Evolution. doi: 10.1093/gbe/evv050.


  • Christina M, et al. 2015. Allelopathic effect of a native species on a major plant invader in Europe. The Science of Nature. 102:1-8. doi: 10.1007/s00114-015-1263-x.


  • Galia W, et al. 2015. Genome Sequence and Annotation of a Human Infection Isolate of Escherichia coli O26:H11 Involved in a Raw Milk Cheese Outbreak. Genome Announcements. 3:e01568-14. doi: 10.1128/genomeA.01568-14.

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Livres

Chapitres de livre



  • Wisniewski-Dyé F, Vial L, Burdman S, Okon Y, Hartmann A. 2015. Phenotypic Variation in <i>Azospirillum</i> spp. and Other Root-Associated Bacteria. In: Biological Nitrogen Fixation. De Bruijn, FJ. John Wiley & Sons, Inc: Hoboken, NJ, USA p. 1047-1054. http://doi.wiley.com/10.1002/9781119053095.ch103.


  • Alloisio N, Kucho K, Pujic P, Normand P. 2015. The <i>Frankia alni</i> Symbiotic Transcriptome. In: Biological Nitrogen Fixation. De Bruijn, FJ. John Wiley & Sons, Inc: Hoboken, NJ, USA p. 757-768. http://doi.wiley.com/10.1002/9781119053095.ch75.

  • Wisniewski-Dyé F, et al. 2015. Core and Accessory Genomes of the Diazotroph Azospirillum. In: Biological Nitrogen Fixation, 2 Volume Set. p. 253. http://books.google.fr/books?hl=fr&lr=&id=TR3yCQAAQBAJ&oi=fnd&pg=PA253&dq=Core+and+Accessory+Genomes+of+the+Diazotroph+Azospirillum&ots=E7vL8QMeo2&sig=36tsUglxpPtMgpPO21Y95flMDvc.


  • Wisniewski-Dyé F, Vial L. 2015. Cell–Cell Communication in Azospirillum and Related PGPR. In: Handbook for Azospirillum. Cassán, FD, Okon, Y, & Creus, CM. Springer International Publishing p. 263-285. http://link.springer.com/chapter/10.1007/978-3-319-06542-7_15.


  • Vacheron J, Renoud S, Muller D, Babalola OO, Prigent-Combaret C. 2015. Alleviation of Abiotic and Biotic Stresses in Plants by Azospirillum. In: Handbook for Azospirillum. Cassán, FD, Okon, Y, & Creus, CM. Springer International Publishing p. 333-365. http://link.springer.com/chapter/10.1007/978-3-319-06542-7_19.
  • Vacheron J, et al. 2015. Plant growth-promoting properties of Pseudomonas biocontrol agent producing 2,4 diacetylphloroglucinol. In: Natural Products and Biocontrol. p. .


  • Normand P, Caumette P, Goulas P, Pujic P, Wisniewski-Dyé F. 2015. Adaptations of Prokaryotes to Their Biotopes and to Physicochemical Conditions in Natural or Anthropized Environments. In: Environmental Microbiology: Fundamentals and Applications. Bertrand, J-C, et al. Springer Netherlands p. 293-351. http://link.springer.com/chapter/10.1007/978-94-017-9118-2_9.


  • Normand P, Duran R, Le Roux X, Morris C, Poggiale J-C. 2015. Biodiversity and Microbial Ecosystems Functioning. In: Environmental Microbiology: Fundamentals and Applications. Bertrand, J-C, et al. Springer Netherlands p. 261-291. http://link.springer.com/chapter/10.1007/978-94-017-9118-2_8.


  • Bertrand J-C, et al. 2015. Biogeochemical Cycles. In: Environmental Microbiology: Fundamentals and Applications. Bertrand, J-C, et al. Springer Netherlands p. 511-617. http://link.springer.com/chapter/10.1007/978-94-017-9118-2_14.


  • Boudouresque C-F, Caumette P, Bertrand J-C, Normand P, Sime-Ngando T. 2015. Systematic and Evolution of Microorganisms: General Concepts. In: Environmental Microbiology: Fundamentals and Applications. Bertrand, J-C, et al. Springer Netherlands p. 107-144. http://link.springer.com/chapter/10.1007/978-94-017-9118-2_5.


  • Bertin PN, Michotey V, Normand P. 2015. Contributions of Descriptive and Functional Genomics to Microbial Ecology. In: Environmental Microbiology: Fundamentals and Applications. Bertrand, J-C, et al. Springer Netherlands p. 831-846. http://link.springer.com/chapter/10.1007/978-94-017-9118-2_18.


  • Bertrand J-C, Caumette P, Lebaron P, Normand P. 2015. The Thematic Fields of Microbial Ecology. In: Environmental Microbiology: Fundamentals and Applications. Bertrand, J-C, et al. Springer Netherlands p. 3-7. http://link.springer.com/chapter/10.1007/978-94-017-9118-2_1.


  • Caumette P, Bertrand J-C, Normand P. 2015. Some Historical Elements of Microbial Ecology. In: Environmental Microbiology: Fundamentals and Applications. Bertrand, J-C, et al. Springer Netherlands p. 9-24. http://link.springer.com/chapter/10.1007/978-94-017-9118-2_2.


  • Lebaron P, Cournoyer B, Lemarchand K, Nazaret S, Servais P. 2015. Environmental and Human Pathogenic Microorganisms. In: Environmental Microbiology: Fundamentals and Applications. Bertrand, J-C, et al. Springer Netherlands p. 619-658. http://link.springer.com/chapter/10.1007/978-94-017-9118-2_15.


  • Caumette P, Brochier-Armanet C, Normand P. 2015. Taxonomy and Phylogeny of Prokaryotes. In: Environmental Microbiology: Fundamentals and Applications. Bertrand, J-C, et al. Springer Netherlands p. 145-190. http://link.springer.com/chapter/10.1007/978-94-017-9118-2_6.

  • Douam F, Lavillette D, Cosset F-L. 2015. Chapter Three - The Mechanism of HCV Entry into Host Cells. In: Progress in Molecular Biology and Translational Science. Klasse, PJ. The Molecular Basis of Viral Infection Vol. 129 Academic Press p. 63-107. http://www.sciencedirect.com/science/article/pii/S1877117314000040.