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Accueil > Productions scientifiques > Année 2015

Année 2015

Articles à comité de lecture



  • Chahad, A. M., Michalet, S., Bechir, A. B., Tidjani, A., Nkongmeneck, B. A., & Dijoux-Franca, M. - G. (2015). Medicinal Plants from the Ouaddaï Province (Chad): An Ethnobotanical Survey of Plants Used in Traditional Medicine. The Journal Of Alternative And Complementary Medicine, 21(9), 569-577. doi:10.1089/acm.2014.0243


  • Murphy, L., Varela, M., Desloire, S., Ftaich, N., Murgia, C., Golder, M., et al. (2015). The Sheep Tetherin Paralog oBST2B Blocks Envelope Glycoprotein Incorporation into Nascent Retroviral Virions. Journal Of Virology, 89(1), 535-544. doi:10.1128/JVI.02751-14


  • Pujic, P., Bolotin, A., Fournier, P., Sorokin, A., Lapidus, A., Richau, K. H., et al. (2015). Genome Sequence of the Atypical Symbiotic Frankia R43 Strain, a Nitrogen-Fixing and Hydrogen-Producing Actinobacterium. Genome Announcements, 3(6), e01387-15. doi:10.1128/genomeA.01387-15


  • Doré, J., Perraud, M., Dieryckx, C., Kohler, A., Morin, E., Henrissat, B., et al. (2015). Comparative genomics, proteomics and transcriptomics give new insight into the exoproteome of the basidiomycete Hebeloma cylindrosporum and its involvement in ectomycorrhizal symbiosis. New Phytologist, 208(4), 1169-1187. doi:10.1111/nph.13546


  • Boubakri, H., Seghezzi, N., Duchateau, M., Gominet, M., Kofroňová, O., Benada, O., et al. (2015). The Absence of Pupylation (Prokaryotic Ubiquitin-Like Protein Modification) Affects Morphological and Physiological Differentiation in Streptomyces coelicolor. Journal Of Bacteriology, 197(21), 3388-3399. doi:10.1128/JB.00591-15


  • Eggermont, H., Balian, E., Azevedo, J. M. N., Beumer, V., Brodin, T., Claudet, J., et al. (2015). Nature-based Solutions: New Influence for Environmental Management and Research in Europe. Gaia - Ecological Perspectives For Science And Society, 24(4), 243-248. doi:10.14512/gaia.24.4.9


  • Cabrol, L., Poly, F., Malhautier, L. C., Pommier, T., Lerondelle, C., Verstraete, W., et al. (2015). Management of microbial communities through transient disturbances enhances the functional resilience of nitrifying gas-biofilters to future disturbances. Environmental Science & Technology. doi:10.1021/acs.est.5b02740


  • Boukerb, A. M., Marti, R., & Cournoyer, B. (2015). Genome Sequences of Three Strains of the Pseudomonas aeruginosa PA7 Clade. Genome Announcements, 3(6), e01366-15. doi:10.1128/genomeA.01366-15


  • Simonin, M., Le Roux, X., Poly, F., Lerondelle, C., Hungate, B. A., Nunan, N., & Niboyet, A. (2015). Coupling Between and Among Ammonia Oxidizers and Nitrite Oxidizers in Grassland Mesocosms Submitted to Elevated CO2 and Nitrogen Supply. Microbial Ecology, 70(3), 809-818. doi:10.1007/s00248-015-0604-9


  • Douam, F., Bobay, L. M., Maurin, G., Fresquet, J., Calland, N., Maisse, C., et al. (2015). Specialization of hepatitis C virus envelope glycoproteins for B-lymphocytes in chronically infected patients. Journal Of Virology, JVI.02516-15. doi:10.1128/JVI.02516-15


  • Legay, N., Grassein, F., Binet, M. N., Arnoldi, C., Personeni, E., Perigon, S., et al. (2015). Plant species identities and fertilization influence on arbuscular mycorrhizal fungal colonisation and soil bacterial activities. Applied Soil Ecology. doi:10.1016/j.apsoil.2015.10.006


  • Borland, S., Oudart, A., Prigent-Combaret, C., Brochier-Armanet, C., & Wisniewski-Dyé, F. (2015). Genome-wide survey of two-component signal transduction systems in the plant growth-promoting bacterium Azospirillum. Bmc Genomics, 16(1). doi:10.1186/s12864-015-1962-x


  • Trinh, D. A., Luu, T. N. M., Trinh, Q. H., Tran, H. S., Tran, T. M., Le, T. P. Q., et al. (2015). Impact of terrestrial runoff on organic matter, trophic state, and phytoplankton in a tropical, upland reservoir. Aquatic Sciences, 1-13. doi:10.1007/s00027-015-0439-y


  • Jusselme, M. D., Saccone, P., Zinger, L., Faure, M., Le Roux, X., Guillaumaud, N., et al. (2015). Variations in snow depth modify N-related soil microbial abundances and functioning during winter in subalpine grassland. Soil Biology And Biochemistry. doi:10.1016/j.soilbio.2015.09.013


  • Branco, L., Rodriguez-Nava, V., Boiron, P., & Pinheiro, D. (2015). Disseminated nocardiosis: report of five cases. Jmm Case Reports, 2(4). doi:10.1099/jmmcr.0.000046


  • Voisin, J., Cournoyer, B., & Mermillod-Blondin, F. (2015). Utilisation de billes de verre comme substrats artificiels pour la caractérisation des communautés microbiennes dans les nappes phréatiques : mise au point méthodologique. La Houille Blanche, (4), 52-57. doi:10.1051/lhb/20150046


  • Hugoni, M., Domaizon, I., Taib, N., Biderre-Petit, C., Agogué, H., Galand, P. E., et al. (2015). Temporal dynamics of active Archaea in oxygen-depleted zones of two deep lakes. Environmental Microbiology Reports, 7(2), 321–329. doi:10.1111/1758-2229.12251


  • Hugoni, M., Agogué, H., Taib, N., Domaizon, I., Moné, A., Galand, P. E., et al. (2015). Temporal Dynamics of Active Prokaryotic Nitrifiers and Archaeal Communities from River to Sea. Microbial Ecology, 70(2), 473-483. doi:10.1007/s00248-015-0601-z


  • Debroas, D., Hugoni, M., & Domaizon, I. (2015). Evidence for an active rare biosphere within freshwater protists community. Molecular Ecology, 24(6), 1236-1247. doi:10.1111/mec.13116


  • Bardon, C., Piola, F., Haichar, F. Z., Meiffren, G., Comte, G., Misery, B., et al. (2015). Identification of B-type procyanidins in <i>Fallopia</i> spp. involved in biological denitrification inhibition (BDI): B-type procyanidins from Fallopia involved in BDI. Environmental Microbiology. doi:10.1111/1462-2920.13062

  • Faure, D., Bonin, P., Duran, R., & Microbial Ecology EC2CO consortium,. (2015). Environmental microbiology as a mosaic of explored ecosystems and issues. Environmental Science And Pollution Research International, 22(18), 13577-13598. doi:10.1007/s11356-015-5164-5


  • Marnata, C., Saulnier, A., Mompelat, D., Krey, T., Cohen, L., Boukadida, C., et al. (2015). Determinants involved in hepatitis C virus and GB virus B primate host restriction. Journal Of Virology, JVI.01161-15. doi:10.1128/JVI.01161-15


  • Minard, G., Tran, F. H., Tran Van, V., Goubert, C., Bellet, C., Lambert, G., et al. (2015). French invasive Asian tiger mosquito populations harbor reduced bacterial microbiota and genetic diversity compared to Vietnamese autochthonous relatives. Microbial Symbioses, 6, 970. doi:10.3389/fmicb.2015.00970


  • Yan, X., Sivignon, A., Alcouffe, P., Burdin, B., Favre-Bonté, S., Bilyy, R., et al. (2015). Brilliant glyconanocapsules for trapping of bacteria. Chem. Commun., 51(67), 13193-13196. doi:10.1039/C5CC04653J


  • Roche, M., Wierinckx, A., Croze, S., Rey, C., Legras-Lachuer, C., Morel, A. - P., et al. (2015). Deregulation of miR-183 and KIAA0101 in Aggressive and Malignant Pituitary Tumors. Frontiers In Medicine, 2. doi:10.3389/fmed.2015.00054


  • Jusselme, M. D., Poly, F., Lebeau, T., Rouland-lefèvre, C., & Miambi, E. (2015). Effects of earthworms on the fungal community and microbial activity in root-adhering soil of Lantana camara during phytoextraction of lead. Applied Soil Ecology, 96, 151-158. doi:10.1016/j.apsoil.2015.07.011


  • Calattini, S., Fusil, F., Mancip, J., Dao Thi, V. L., Granier, C., Gadot, N., et al. (2015). Functional and Biochemical Characterization of HCV Particles Produced in a Humanized Liver Mouse Model. Journal Of Biological Chemistry, jbc.M115.662999. doi:10.1074/jbc.M115.662999


  • Youenou, B., Favre-Bonté, S., Bodilis, J., Brothier, E., Dubost, A., Muller, D., & Nazaret, S. (2015). Comparative genomics of environmental and clinical <i>Stenotrophomonas maltophilia</i> strains with different antibiotic resistance profiles. Genome Biology And Evolution, evv161. doi:10.1093/gbe/evv161


  • Gtari, M., Ghodhbane-Gtari, F., Nouioui, I., Ktari, A., Hezbri, K., Mimouni, W., et al. (2015). Cultivating the uncultured: growing the recalcitrant cluster-2 Frankia strains. Scientific Reports, 5, 13112. doi:10.1038/srep13112


  • Chamam, A., Wisniewski-Dyé, F., Comte, G., Bertrand, C., & Prigent-Combaret, C. (2015). Differential responses of Oryza sativa secondary metabolism to biotic interactions with cooperative, commensal and phytopathogenic bacteria. Planta. doi:10.1007/s00425-015-2382-5


  • René-Martellet, M., Valiente Moro, C., Chêne, J., Bourdoiseau, G., Chabanne, L., & Mavingui, P. (2015). Update on epidemiology of canine babesiosis in Southern France. Bmc Veterinary Research, 11(1). doi:10.1186/s12917-015-0525-3


  • Lassalle, F., Muller, D., & Nesme, X. (2015). Ecological speciation in bacteria: reverse ecology approaches reveal the adaptive part of bacterial cladogenesis. Research In Microbiology. doi:10.1016/j.resmic.2015.06.008


  • Crouzet, O., Poly, F., Bonnemoy, F., Bru, D., Batisson, I., Bohatier, J., et al. (2015). Functional and structural responses of soil N-cycling microbial communities to the herbicide mesotrione: a dose-effect microcosm approach. Environmental Science And Pollution Research, 1-11. doi:10.1007/s11356-015-4797-8


  • Sghaier, H., Hezbri, K., Ghodhbane-Gtari, F., Pujic, P., Sen, A., Daffonchio, D., et al. (2015). Stone-dwelling actinobacteria Blastococcus saxobsidens, Modestobacter marinus and Geodermatophilus obscurus proteogenomes. The Isme Journal, 10(1), 21–29. doi:10.1038/ismej.2015.108

  • Svistoonoff, S., Tromas, A., Diagne, N., Alloisio, N., Laplaze, L., Champion, A., et al. (2015). How Transcriptomics Revealed New Information on Actinorhizal Symbioses Establishment and Evolution. Biological Nitrogen Fixation, 2 Volume Set, 425. Consulté de http://books.google.fr/books?hl=fr&lr=&id=TR3yCQAAQBAJ&oi=fnd&pg=PA425&ots=E7vL8QMftV&sig=Wr0CSu23thrAjEPvhWz1z1y7bFs

  • Normand, P., Benson, D. R., & Tisa, L. S. (2015). Genome Characteristics of Frankia sp. Reflect Host Range and Host Plant Biogeography. Biological Nitrogen Fixation, 2 Volume Set, 245. Consulté de http://books.google.fr/books?hl=fr&lr=&id=TR3yCQAAQBAJ&oi=fnd&pg=PA245&ots=E7vL8QMfo0&sig=XPqUfEHoOQEIzXqSJW2HFiwK4I8


  • Barot, S., Abbadie, L., Couvet, D., Hobbs, R. J., Lavorel, S., Mace, G. M., & Le Roux, X. (2015). Evolving away from the linear model of research: a response to Courchamp et al. Trends In Ecology & Evolution. doi:10.1016/j.tree.2015.05.005


  • Fénéant, L., Potel, J., François, C., Sané, F., Douam, F., Belouzard, S., et al. (2015). New insights into the understanding of hepatitis C virus entry and cell-to-cell transmission by using the ionophore Monensin A. Journal Of Virology, JVI.00192-15. doi:10.1128/JVI.00192-15


  • Persson, T., Battenberg, K., Demina, I. V., Vigil-Stenman, T., Vanden Heuvel, B., Pujic, P., et al. (2015). Candidatus Frankia Datiscae Dg1, the Actinobacterial Microsymbiont of Datisca glomerata, Expresses the Canonical nod Genes nodABC in Symbiosis with Its Host Plant. (F. Börnke, Éd.)Plos One, 10(5), e0127630. doi:10.1371/journal.pone.0127630


  • Heraud, S., Freydiere, A. - M., Doleans-Jordheim, A., Bes, M., Tristan, A., Vandenesch, F., et al. (2015). Direct Identification of <i>Staphylococcus aureus</i> and Determination of Methicillin Susceptibility From Positive Blood-Culture Bottles in a Bact/ALERT System Using Binax Now <i>S. aureus</i> and PBP2a Tests. Annals Of Laboratory Medicine, 35(4), 454. doi:10.3343/alm.2015.35.4.454


  • Dequivre, M., Diel, B., Villard, C., Sismeiro, O., Durot, M., Coppée, J. Y., et al. (2015). Small RNA Deep-Sequencing Analyses Reveal a New Regulator of Virulence in Agrobacterium fabrum C58. Molecular Plant-Microbe Interactions, 28(5), 580-589. doi:10.1094/MPMI-12-14-0380-FI


  • Granqvist, E., Sun, J., Op den Camp, R., Pujic, P., Hill, L., Normand, P., et al. (2015). Bacterial-induced calcium oscillations are common to nitrogen-fixing associations of nodulating legumes and nonlegumes. New Phytologist, n/a-n/a. doi:10.1111/nph.13464


  • Raquin, V., Valiente Moro, C., Saucereau, Y., Tran, F. H., Potier, P., & Mavingui, P. (2015). Native Wolbachia from Aedes albopictus Blocks Chikungunya Virus Infection In Cellulo. (K. Bourtzis, Éd.)Plos One, 10(4), e0125066. doi:10.1371/journal.pone.0125066


  • George, D. R., Finn, R. D., Graham, K. M., Mul, M. F., Maurer, V., Valiente Moro, C., & Sparagano, O. A. E. (2015). Should the poultry red mite Dermanyssus gallinae be of wider concern for veterinary and medical science? Parasites & Vectors, 8(1), 1-10. doi:10.1186/s13071-015-0768-7


  • Bonanno, L., Loukiadis, E., Mariani-Kurkdjian, P., Oswald, E., Garnier, L., Michel, V., & Auvray, F. (2015). Diversity of Shiga toxin-producing Escherichia coli (STEC) O26:H11: characterization of stx subtypes and insertion sites of Stx and EspK bacteriophages. Applied And Environmental Microbiology, AEM.00077-15. doi:10.1128/AEM.00077-15


  • Goubert, C., Modolo, L., Vieira, C., Valiente Moro, C., Mavingui, P., & Boulesteix, M. (2015). De novo assembly and annotation of the Asian tiger mosquito (Aedes albopictus) repeatome with dnaPipeTE from raw genomic reads and comparative analysis with the yellow fever mosquito (Aedes aegypti). Genome Biology And Evolution. doi:10.1093/gbe/evv050


  • Christina, M., Rouifed, S., Puijalon, S., Vallier, F., Meiffren, G., Bellvert, F., & Piola, F. (2015). Allelopathic effect of a native species on a major plant invader in Europe. The Science Of Nature, 102(3-4), 1-8. doi:10.1007/s00114-015-1263-x


  • Galia, W., Mariani-Kurkdjian, P., Loukiadis, E., Blanquet-Diot, S., Leriche, F., Brugère, H., et al. (2015). Genome Sequence and Annotation of a Human Infection Isolate of Escherichia coli O26:H11 Involved in a Raw Milk Cheese Outbreak. Genome Announcements, 3(1), e01568-14. doi:10.1128/genomeA.01568-14


  • Kohler, A., Kuo, A., Nagy, L. G., Morin, E., Barry, K. W., Buscot, F., et al. (2015). Convergent losses of decay mechanisms and rapid turnover of symbiosis genes in mycorrhizal mutualists. Nature Genetics, advance online publication(4), 410. doi:10.1038/ng.3223


  • Moja, S., Guitton, Y., Nicolè, F., Legendre, L., Pasquier, B., Upson, T., & Jullien, F. (2015). Genome size and plastid trnK-matK markers give new insights into the evolutionary history of the genus Lavandula L. Plant Biosystems - An International Journal Dealing With All Aspects Of Plant Biology, (ja), 1-9. doi:10.1080/11263504.2015.1014006

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Livres

Chapitres de livre



  • Wisniewski-Dyé, F., Vial, L., Burdman, S., Okon, Y., & Hartmann, A. (2015). Phenotypic Variation in <i>Azospirillum</i> spp. and Other Root-Associated Bacteria. Dans F. J. de Bruijn (Éd.), Biological Nitrogen Fixation (p. 1047-1054). Hoboken, NJ, USA: John Wiley & Sons, Inc. Consulté de http://doi.wiley.com/10.1002/9781119053095.ch103


  • Alloisio, N., Kucho, K., Pujic, P., & Normand, P. (2015). The <i>Frankia alni</i> Symbiotic Transcriptome. Dans F. J. de Bruijn (Éd.), Biological Nitrogen Fixation (p. 757-768). Hoboken, NJ, USA: John Wiley & Sons, Inc. Consulté de http://doi.wiley.com/10.1002/9781119053095.ch75

  • Wisniewski-Dyé, F., Drogue, B., Borland, S., Prigent-Combaret, C., Borziak, K., Zhulin, I. B., et al. (2015). Core and Accessory Genomes of the Diazotroph Azospirillum. Dans Biological Nitrogen Fixation, 2 Volume Set (p. 253). Consulté de http://books.google.fr/books?hl=fr&lr=&id=TR3yCQAAQBAJ&oi=fnd&pg=PA253&dq=Core+and+Accessory+Genomes+of+the+Diazotroph+Azospirillum&ots=E7vL8QMeo2&sig=36tsUglxpPtMgpPO21Y95flMDvc


  • Wisniewski-Dyé, F., & Vial, L. (2015). Cell–Cell Communication in Azospirillum and Related PGPR. Dans F. D. Cassán, Y. Okon, & C. M. Creus (Éd.), Handbook For Azospirillum (p. 263-285). Springer International Publishing. Consulté de http://link.springer.com/chapter/10.1007/978-3-319-06542-7_15


  • Vacheron, J., Renoud, S., Muller, D., Babalola, O. O., & Prigent-Combaret, C. (2015). Alleviation of Abiotic and Biotic Stresses in Plants by Azospirillum. Dans F. D. Cassán, Y. Okon, & C. M. Creus (Éd.), Handbook For Azospirillum (p. 333-365). Springer International Publishing. Consulté de http://link.springer.com/chapter/10.1007/978-3-319-06542-7_19
  • Vacheron, J., Combes-Meynet, E., Bellvert, F., Moënne-Loccoz, Y., Muller, D., & Prigent-Combaret, C. (2015). Plant growth-promoting properties of Pseudomonas biocontrol agent producing 2,4 diacetylphloroglucinol. Dans Natural Products And Biocontrol ((C. Bertrand, Ed.).Presses Universitaires de Perpignan.).


  • Normand, P., Caumette, P., Goulas, P., Pujic, P., & Wisniewski-Dyé, F. (2015). Adaptations of Prokaryotes to Their Biotopes and to Physicochemical Conditions in Natural or Anthropized Environments. Dans J. - C. Bertrand, P. Caumette, P. Lebaron, R. Matheron, P. Normand, & T. Sime-Ngando (Éd.), Environmental Microbiology: Fundamentals And Applications (p. 293-351). Springer Netherlands. Consulté de http://link.springer.com/chapter/10.1007/978-94-017-9118-2_9


  • Normand, P., Duran, R., Le Roux, X., Morris, C., & Poggiale, J. - C. (2015). Biodiversity and Microbial Ecosystems Functioning. Dans J. - C. Bertrand, P. Caumette, P. Lebaron, R. Matheron, P. Normand, & T. Sime-Ngando (Éd.), Environmental Microbiology: Fundamentals And Applications (p. 261-291). Springer Netherlands. Consulté de http://link.springer.com/chapter/10.1007/978-94-017-9118-2_8


  • Bertrand, J. - C., Bonin, P., Caumette, P., Gattuso, J. - P., Grégori, G., Guyoneaud, R., et al. (2015). Biogeochemical Cycles. Dans J. - C. Bertrand, P. Caumette, P. Lebaron, R. Matheron, P. Normand, & T. Sime-Ngando (Éd.), Environmental Microbiology: Fundamentals And Applications (p. 511-617). Springer Netherlands. Consulté de http://link.springer.com/chapter/10.1007/978-94-017-9118-2_14


  • Boudouresque, C. - F., Caumette, P., Bertrand, J. - C., Normand, P., & Sime-Ngando, T. (2015). Systematic and Evolution of Microorganisms: General Concepts. Dans J. - C. Bertrand, P. Caumette, P. Lebaron, R. Matheron, P. Normand, & T. Sime-Ngando (Éd.), Environmental Microbiology: Fundamentals And Applications (p. 107-144). Springer Netherlands. Consulté de http://link.springer.com/chapter/10.1007/978-94-017-9118-2_5


  • Bertin, P. N., Michotey, V., & Normand, P. (2015). Contributions of Descriptive and Functional Genomics to Microbial Ecology. Dans J. - C. Bertrand, P. Caumette, P. Lebaron, R. Matheron, P. Normand, & T. Sime-Ngando (Éd.), Environmental Microbiology: Fundamentals And Applications (p. 831-846). Springer Netherlands. Consulté de http://link.springer.com/chapter/10.1007/978-94-017-9118-2_18


  • Bertrand, J. - C., Caumette, P., Lebaron, P., & Normand, P. (2015). The Thematic Fields of Microbial Ecology. Dans J. - C. Bertrand, P. Caumette, P. Lebaron, R. Matheron, P. Normand, & T. Sime-Ngando (Éd.), Environmental Microbiology: Fundamentals And Applications (p. 3-7). Springer Netherlands. Consulté de http://link.springer.com/chapter/10.1007/978-94-017-9118-2_1


  • Caumette, P., Bertrand, J. - C., & Normand, P. (2015). Some Historical Elements of Microbial Ecology. Dans J. - C. Bertrand, P. Caumette, P. Lebaron, R. Matheron, P. Normand, & T. Sime-Ngando (Éd.), Environmental Microbiology: Fundamentals And Applications (p. 9-24). Springer Netherlands. Consulté de http://link.springer.com/chapter/10.1007/978-94-017-9118-2_2


  • Lebaron, P., Cournoyer, B., Lemarchand, K., Nazaret, S., & Servais, P. (2015). Environmental and Human Pathogenic Microorganisms. Dans J. - C. Bertrand, P. Caumette, P. Lebaron, R. Matheron, P. Normand, & T. Sime-Ngando (Éd.), Environmental Microbiology: Fundamentals And Applications (p. 619-658). Springer Netherlands. Consulté de http://link.springer.com/chapter/10.1007/978-94-017-9118-2_15


  • Caumette, P., Brochier-Armanet, C., & Normand, P. (2015). Taxonomy and Phylogeny of Prokaryotes. Dans J. - C. Bertrand, P. Caumette, P. Lebaron, R. Matheron, P. Normand, & T. Sime-Ngando (Éd.), Environmental Microbiology: Fundamentals And Applications (p. 145-190). Springer Netherlands. Consulté de http://link.springer.com/chapter/10.1007/978-94-017-9118-2_6

  • Douam, F., Lavillette, D., & Cosset, F. - L. (2015). Chapter Three - The Mechanism of HCV Entry into Host Cells. Dans P. J. Klasse (Éd.), Progress In Molecular Biology And Translational Science (Vol. 129, p. 63-107). Academic Press. Consulté de http://www.sciencedirect.com/science/article/pii/S1877117314000040