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Accueil > Equipes de Recherche > Diversité et adaptation des bactéries phytopathogènes > En - Speciation des bacteries phytopathogenes

En - Speciation des bacteries phytopathogenes

Team leader : NESME Xavier & LAVIRE Céline

Team :

Permanent members

BERTOLLA Franck Lecturer (MCF), UCB
CHAPULLIOT David Technician (T), INRA
GAILLARD Vincent Assistant Engineer (AI), UCB
KERZAON Isabelle Lecturer (MCF), UCB
LAVIRE Céline Lecturer (MCF), UCB
NESME Xavier Research Engineer (IR), INRA
VIAL Ludovic Lecturer (MCF), UCB

Non permanent members

DUPLAY Quentin PhD Student(2014-2017)
MEYER Thibault PhD Student(2014-2017)

in progress...

Bibliography :


  • Bouri, M., Gharsa, H.B., Vial, L., Lavire, C., Glick, B.R., Rhouma, A., 2017. A simple and stable method of tagging Agrobacterium fabrum C58 for environmental monitoring. Phytopathologia Mediterranea 56, 1-9.

  • Chapalain, A., Groleau, M.-C., Le Guillouzer, S., Miomandre, A., Vial, L., Milot, S., Déziel, E., 2017. Interplay between 4-hydroxy-3-methyl-2-alkylquinoline and N-acyl-homoserine lactone signaling in a Burkholderia cepacia complex clinical strain. Frontiers in Microbiology 8.

  • Habbadi, K., Meyer, T., Vial, L., Gaillard, V., Benkirane, R., Benbouazza, A., Kerzaon, I., Achbani, E.H., Lavire, C., 2017. Essential oils of Origanum compactum and Thymus vulgaris exert a protective effect against the phytopathogen Allorhizobium vitis. Environmental Science and Pollution Research International 1-10.

  • Larousse, M., Rancurel, C., Syska, C., Palero, F., Etienne, C., Industri, B., Nesme, X., Bardin, M., Galiana, E., 2017. Tomato root microbiota and Phytophthora parasitica-associated disease. Microbiome 5, 56.

  • Lassalle, F., Planel, R., Penel, S., Chapulliot, D., Barbe, V., Dubost, A., Calteau, A., Vallenet, D., Mornico, D., Bigot, T., Guéguen, L., Vial, L., Muller, D., Daubin, V., Nesme, X., 2017. Ancestral Genome Estimation Reveals the History of Ecological Diversification in Agrobacterium. Genome Biology and Evolution 9, 3413-3431.

  • Le Quéré, A., Tak, N., Gehlot, H.S., Lavire, C., Meyer, T., Chapulliot, D., Rathi, S., Sakrouhi, I., Rocha, G., Rohmer, M., Severac, D., Filali-Maltouf, A., Munive, J.-A., 2017. Genomic characterization of Ensifer aridi, a proposed new species of nitrogen-fixing rhizobium recovered from Asian, African and American deserts. BMC Genomics 18, 85.

  • Vacheron, J., Desbrosses, G., Renoud, S., Padilla-Aguilar, R.-M., Walker, V., Muller, D., Prigent-Combaret, C., 2017. Differential contribution of plant-beneficial functions from Pseudomonas kilonensis F113 to root system architecture alterations in Arabidopsis thaliana and Zea mays. Molecular Plant-Microbe Interactions MPMI–07.

  • Vacheron, J., Dubost, A., Chapulliot, D., Prigent-Combaret, C., Muller, D., 2017. Draft Genome Sequence of Chryseobacterium sp. JV274 Isolated from Maize Rhizosphere. Genome Announcements 5, e00122-17.


  • Baude, J., Vial, L., Villard, C., Campillo, T., Lavire, C., Nesme, X., Hommais, F., 2016. Coordinated Regulation of Species-Specific Hydroxycinnamic Acid Degradation and Siderophore Biosynthesis Pathways in Agrobacterium fabrum. Applied and Environmental Microbiology 82, AEM.00419-16.

  • Bouri, M., Chattaoui, M., Gharsa, H.B., Mcclean, A., Kluepfel, D., Nesme, X., Rhouma, A., 2016. Analysis of agrobacterium populations isolated from Tunisian soils: genetic structure, Avirulent-virulent ratios and characterization of tumorigenic strains. Journal of Plant Pathology 98, 265-274.


  • Wisniewski-Dyé, F., Vial, L., Burdman, S., Okon, Y., Hartmann, A., 2015. Phenotypic Variation in <i>Azospirillum</i> spp. and Other Root-Associated Bacteria, dans: de Bruijn, F.J. (éd.), Biological Nitrogen Fixation. John Wiley & Sons, Inc, Hoboken, NJ, USA, p. 1047-1054.

  • Dequivre, M., Diel, B., Villard, C., Sismeiro, O., Durot, M., Coppée, J.Y., Nesme, X., Vial, L., Hommais, F., 2015. Small RNA Deep-Sequencing Analyses Reveal a New Regulator of Virulence in Agrobacterium fabrum C58. Molecular Plant-Microbe Interactions 28, 580-589.

  • Habbadi, K., 2015. Biological Control of <i>Agrobacterium vitis<i/> using Essential Oils of <i>Origanum compactum<i/> and <i>Thymus vulgaris<i/>.

  • Lassalle, F., Muller, D., Nesme, X., 2015. Ecological speciation in bacteria: reverse ecology approaches reveal the adaptive part of bacterial cladogenesis. Research in Microbiology.

  • Lassalle, F., Périan, S., Bataillon, T., Nesme, X., Duret, L., Daubin, V., 2015. GC-Content Evolution in Bacterial Genomes: The Biased Gene Conversion Hypothesis Expands. PLoS genetics 11, e1004941.

  • Wisniewski-Dyé, F., Vial, L., 2015. Cell–Cell Communication in Azospirillum and Related PGPR, dans: Cassán, F.D., Okon, Y., Creus, C.M. (éd.), Handbook For Azospirillum. Springer International Publishing, p. 263-285.


  • Campillo, T., Renoud, S., Kerzaon, I., Vial, L., Baude, J., Gaillard, V., Bellvert, F., Chamignon, C., Comte, G., Nesme, X., Lavire, C., Hommais, F., 2014. Analysis of hydroxycinnamic acids degradation in <i>Agrobacterium fabrum<i/> reveals a CoA-dependent, beta-oxidative deacetylation pathway. Applied and Environmental Microbiology AEM.00475-14.

  • Mousavi, S.A., Österman, J., Wahlberg, N., Nesme, X., Lavire, C., Vial, L., Paulin, L., de Lajudie, P., Lindström, K., 2014. Phylogeny of the Rhizobium–Allorhizobium–Agrobacterium clade supports the delineation of Neorhizobium gen. nov. Systematic and Applied Microbiology 37.

  • Mousavi, S.A., Willems, A., Nesme, X., de Lajudie, P., Lindström, K., 2014. Revised phylogeny of Rhizobiaceae: Proposal of the delineation of Pararhizobium gen. nov., and 13 new species combinations. Systematic and Applied Microbiology.

  • Ramírez-Bahena, M.H., Vial, L., Lassalle, F., Diel, B., Chapulliot, D., Daubin, V., Nesme, X., Muller, D., 2014. Single acquisition of protelomerase gave rise to speciation of a large and diverse clade within the Agrobacterium/Rhizobium supercluster characterized by the presence of a linear chromid. Molecular Phylogenetics and Evolution.